Strain identifier

BacDive ID: 6053

Type strain: No

Species: Pseudomonas bathycetes

Strain Designation: C2M2

Strain history: ATCC 23597 <-- R. R. Colwell C2M2 <-- C. ZoBell and R. Morita.

NCBI tax ID(s): 1486246 (species)

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General

@ref: 2826

BacDive-ID: 6053

DSM-Number: 6798

keywords: 16S sequence, Bacteria, psychrophilic

description: Pseudomonas bathycetes C2M2 is a psychrophilic bacterium that was isolated from sediment.

NCBI tax id

  • NCBI tax id: 1486246
  • Matching level: species

strain history

@refhistory
2826<- NCIMB (Deleya sp.) <- ATCC <- R.R. Colwell ("Pseudomonas bathycetes") <- C.E. ZoBell and R.Y. Morita
67770ATCC 23597 <-- R. R. Colwell C2M2 <-- C. ZoBell and R. Morita.

doi: 10.13145/bacdive6053.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas bathycetes
  • full scientific name: Pseudomonas bathycetes Quigley and Colwell 1968

@ref: 2826

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas sp.

full scientific name: Halomonas sp.

strain designation: C2M2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2826SEA WATER AGAR (DSMZ Medium 246)yeshttps://mediadive.dsmz.de/medium/246Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water
2826BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
2826positivegrowth20
67770positivegrowth25

Isolation, sampling and environmental information

isolation

@refsample typegeographic location
2826sedimentPacific Ocean, Challenger deep (10373 Metres) in Marianas Trench
67770Deep sea sediments of the Pacific Ocean

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_137.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_104;97_111;98_121;99_137&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: MG971241
  • Sequence Identity:
  • Total samples: 10165
  • soil counts: 435
  • aquatic counts: 5177
  • animal counts: 4415
  • plant counts: 138

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
2826Halomonas sp. strain DSM _6798_Clone1 16S ribosomal RNA gene, partial sequenceMG9712321522nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone2 16S ribosomal RNA gene, partial sequenceMG9712331522nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone3 16S ribosomal RNA gene, partial sequenceMG9712341518nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone4 16S ribosomal RNA gene, partial sequenceMG9712351523nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone5 16S ribosomal RNA gene, partial sequenceMG9712361524nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone6 16S ribosomal RNA gene, partial sequenceMG9712371524nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone7 16S ribosomal RNA gene, partial sequenceMG9712381523nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone8 16S ribosomal RNA gene, partial sequenceMG9712391524nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone9 16S ribosomal RNA gene, partial sequenceMG9712401523nuccore1486246
2826Halomonas sp. strain DSM _6798_Clone10 16S ribosomal RNA gene, partial sequenceMG9712411524nuccore1486246

External links

@ref: 2826

culture collection no.: DSM 6798, ATCC 23597, JCM 6308, LMG 2145, NCIB 1550, CGMCC 1.1808, IAM 13162, NCIMB 1550

straininfo link

  • @ref: 75540
  • straininfo: 2172

Reference

@idauthorscataloguedoi/urltitle
2826Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6798)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6798
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75540Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2172.1StrainInfo: A central database for resolving microbial strain identifiers