Strain identifier
BacDive ID: 6043
Type strain:
Species: Halomonas anticariensis
Strain Designation: FP35
Strain history: <- E. Q. Arroquia; FP35 <- M. J. Martínez-Cánovas
NCBI tax ID(s): 1121939 (strain), 258591 (species)
General
@ref: 6291
BacDive-ID: 6043
DSM-Number: 16096
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile
description: Halomonas anticariensis FP35 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1121939 | strain |
258591 | species |
strain history
- @ref: 6291
- history: <- E. Q. Arroquia; FP35 <- M. J. Martínez-Cánovas
doi: 10.13145/bacdive6043.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas anticariensis
- full scientific name: Halomonas anticariensis Martínez-Cánovas et al. 2004
synonyms
- @ref: 20215
- synonym: Litchfieldella anticariensis
@ref: 6291
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas anticariensis
full scientific name: Halomonas anticariensis Martínez-Cánovas et al. 2004
strain designation: FP35
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | motility | confidence |
---|---|---|---|---|---|
31237 | negative | 3.25 µm | 0.86 µm | yes | |
69480 | yes | 99.393 | |||
69480 | negative | 99.985 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6291 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 25.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
33970 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6291 | positive | growth | 30 | mesophilic |
31237 | positive | growth | 20-45 | |
31237 | positive | optimum | 32.5 | mesophilic |
33970 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
31237 | positive | growth | 6.0-9.0 | alkaliphile |
31237 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 31237
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
31237 | no | |
69481 | no | 100 |
69480 | no | 99.74 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31237 | NaCl | positive | growth | 0.5-15 % |
31237 | NaCl | positive | optimum | 7.5 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31237 | 30089 | acetate | + | carbon source |
31237 | 15963 | ribitol | + | carbon source |
31237 | 16449 | alanine | + | carbon source |
31237 | 22599 | arabinose | + | carbon source |
31237 | 16947 | citrate | + | carbon source |
31237 | 28757 | fructose | + | carbon source |
31237 | 24265 | gluconate | + | carbon source |
31237 | 17234 | glucose | + | carbon source |
31237 | 17754 | glycerol | + | carbon source |
31237 | 27570 | histidine | + | carbon source |
31237 | 29864 | mannitol | + | carbon source |
31237 | 37684 | mannose | + | carbon source |
31237 | 17268 | myo-inositol | + | carbon source |
31237 | 17822 | serine | + | carbon source |
31237 | 27082 | trehalose | + | carbon source |
31237 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31237 | catalase | + | 1.11.1.6 |
31237 | cytochrome oxidase | + | 1.9.3.1 |
31237 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 6291
- sample type: soil
- geographic location: Malaga, Fuente de Piedra
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_3616.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_1877;97_2254;98_2767;99_3616&stattab=map
- Last taxonomy: Halomonas anticariensis subclade
- 16S sequence: AY489405
- Sequence Identity:
- Total samples: 1526
- soil counts: 42
- aquatic counts: 324
- animal counts: 1157
- plant counts: 3
Safety information
risk assessment
- @ref: 6291
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6291
- description: Halomonas anticariensis strain FP35 16S ribosomal RNA gene, partial sequence
- accession: AY489405
- length: 1464
- database: ena
- NCBI tax ID: 1121939
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Halomonas anticariensis FP35 = DSM 16096 | GCA_000409775 | scaffold | ncbi | 1121939 |
66792 | Halomonas anticariensis FP35 = DSM 16096 | GCA_000428505 | scaffold | ncbi | 1121939 |
66792 | Halomonas anticariensis FP35 = DSM 16096 | 1121939.10 | wgs | patric | 1121939 |
66792 | Halomonas anticariensis FP35 = DSM 16096 | 1121939.11 | wgs | patric | 1121939 |
66792 | Halomonas anticariensis FP35, DSM 16096 | 2524614562 | draft | img | 1121939 |
66792 | Halomonas anticariensis FP35 | 2571042376 | draft | img | 1121939 |
GC content
- @ref: 6291
- GC-content: 61.4
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 93.552 | yes |
flagellated | yes | 74.417 | no |
gram-positive | no | 98.905 | yes |
anaerobic | no | 98.404 | yes |
aerobic | yes | 91.78 | no |
halophile | yes | 89.99 | yes |
spore-forming | no | 95.364 | yes |
thermophile | no | 98.503 | no |
glucose-util | yes | 96.096 | yes |
glucose-ferment | no | 71.506 | no |
External links
@ref: 6291
culture collection no.: DSM 16096
straininfo link
- @ref: 75530
- straininfo: 127469
literature
- topic: Phylogeny
- Pubmed-ID: 21656193
- title: Halomonas qijiaojingensis sp. nov. and Halomonas flava sp. nov., two moderately halophilic bacteria isolated from a salt lake.
- authors: Chen C, Shi R, Liu BB, Zhang YJ, Sun HZ, Li CT, Tang SK, Zhang LL, Li WJ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-011-9591-0
- year: 2011
- mesh: Base Composition, China, Halomonas/*classification/genetics/*isolation & purification/metabolism, Lakes/*microbiology, Molecular Sequence Data, Phylogeny, Sodium Chloride/*metabolism
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed | journal |
---|---|---|---|---|---|---|---|
6291 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16096) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16096 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
31237 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27561 | 28776041 | ||
33970 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6127 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | ||||
75530 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID127469.1 | StrainInfo: A central database for resolving microbial strain identifiers |