Strain identifier

BacDive ID: 6043

Type strain: Yes

Species: Halomonas anticariensis

Strain Designation: FP35

Strain history: <- E. Q. Arroquia; FP35 <- M. J. Martínez-Cánovas

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6291

BacDive-ID: 6043

DSM-Number: 16096

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile

description: Halomonas anticariensis FP35 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1121939strain
258591species

strain history

  • @ref: 6291
  • history: <- E. Q. Arroquia; FP35 <- M. J. Martínez-Cánovas

doi: 10.13145/bacdive6043.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas anticariensis
  • full scientific name: Halomonas anticariensis Martínez-Cánovas et al. 2004
  • synonyms

    • @ref: 20215
    • synonym: Litchfieldella anticariensis

@ref: 6291

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas anticariensis

full scientific name: Halomonas anticariensis Martínez-Cánovas et al. 2004

strain designation: FP35

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthmotilityconfidence
31237negative3.25 µm0.86 µmyes
69480yes99.393
69480negative99.985

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6291BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 25.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33970Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
6291positivegrowth30mesophilic
31237positivegrowth20-45
31237positiveoptimum32.5mesophilic
33970positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
31237positivegrowth6.0-9.0alkaliphile
31237positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 31237
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
31237no
69481no100
69480no99.74

halophily

@refsaltgrowthtested relationconcentration
31237NaClpositivegrowth0.5-15 %
31237NaClpositiveoptimum7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3123730089acetate+carbon source
3123715963ribitol+carbon source
3123716449alanine+carbon source
3123722599arabinose+carbon source
3123716947citrate+carbon source
3123728757fructose+carbon source
3123724265gluconate+carbon source
3123717234glucose+carbon source
3123717754glycerol+carbon source
3123727570histidine+carbon source
3123729864mannitol+carbon source
3123737684mannose+carbon source
3123717268myo-inositol+carbon source
3123717822serine+carbon source
3123727082trehalose+carbon source
3123717632nitrate+reduction

enzymes

@refvalueactivityec
31237catalase+1.11.1.6
31237cytochrome oxidase+1.9.3.1
31237urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 6291
  • sample type: soil
  • geographic location: Malaga, Fuente de Piedra
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3616.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_1877;97_2254;98_2767;99_3616&stattab=map
  • Last taxonomy: Halomonas anticariensis subclade
  • 16S sequence: AY489405
  • Sequence Identity:
  • Total samples: 1526
  • soil counts: 42
  • aquatic counts: 324
  • animal counts: 1157
  • plant counts: 3

Safety information

risk assessment

  • @ref: 6291
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6291
  • description: Halomonas anticariensis strain FP35 16S ribosomal RNA gene, partial sequence
  • accession: AY489405
  • length: 1464
  • database: ena
  • NCBI tax ID: 1121939

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas anticariensis FP35 = DSM 16096GCA_000409775scaffoldncbi1121939
66792Halomonas anticariensis FP35 = DSM 16096GCA_000428505scaffoldncbi1121939
66792Halomonas anticariensis FP35 = DSM 160961121939.10wgspatric1121939
66792Halomonas anticariensis FP35 = DSM 160961121939.11wgspatric1121939
66792Halomonas anticariensis FP35, DSM 160962524614562draftimg1121939
66792Halomonas anticariensis FP352571042376draftimg1121939

GC content

  • @ref: 6291
  • GC-content: 61.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes93.552yes
flagellatedyes74.417no
gram-positiveno98.905yes
anaerobicno98.404yes
aerobicyes91.78no
halophileyes89.99yes
spore-formingno95.364yes
thermophileno98.503no
glucose-utilyes96.096yes
glucose-fermentno71.506no

External links

@ref: 6291

culture collection no.: DSM 16096

straininfo link

  • @ref: 75530
  • straininfo: 127469

literature

  • topic: Phylogeny
  • Pubmed-ID: 21656193
  • title: Halomonas qijiaojingensis sp. nov. and Halomonas flava sp. nov., two moderately halophilic bacteria isolated from a salt lake.
  • authors: Chen C, Shi R, Liu BB, Zhang YJ, Sun HZ, Li CT, Tang SK, Zhang LL, Li WJ
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-011-9591-0
  • year: 2011
  • mesh: Base Composition, China, Halomonas/*classification/genetics/*isolation & purification/metabolism, Lakes/*microbiology, Molecular Sequence Data, Phylogeny, Sodium Chloride/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
6291Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16096)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16096
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31237Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2756128776041
33970Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6127
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75530Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID127469.1StrainInfo: A central database for resolving microbial strain identifiers