Strain identifier

BacDive ID: 6029

Type strain: Yes

Species: Halomonas pantelleriensis

Strain Designation: AAP

Strain history: CIP <- 1998, DSMZ <- A. Gambacorta, ICB Insituto di Chimica Biomolecolare, Naples, Italy: strain AAP

NCBI tax ID(s): 48727 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 3675

BacDive-ID: 6029

DSM-Number: 9661

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Halomonas pantelleriensis AAP is a mesophilic, motile bacterium that was isolated from hard sand of the lake of Venere.

NCBI tax id

  • NCBI tax id: 48727
  • Matching level: species

strain history

@refhistory
3675<- A. Gambacorta
121532CIP <- 1998, DSMZ <- A. Gambacorta, ICB Insituto di Chimica Biomolecolare, Naples, Italy: strain AAP

doi: 10.13145/bacdive6029.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas pantelleriensis
  • full scientific name: Halomonas pantelleriensis corrig. Romano et al. 1997
  • synonyms

    @refsynonym
    20215Franzmannia pantelleriensis
    20215Halomonas pantelleriense

@ref: 3675

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas pantelleriensis

full scientific name: Halomonas pantelleriensis Romano et al. 1997

strain designation: AAP

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.614
6948099.997negative
121532yesnegativerod-shaped

colony morphology

  • @ref: 121532

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3675HALOMONAS PANTELLERIENSE (DSMZ Medium 752)yeshttps://mediadive.dsmz.de/medium/752Name: HALOMONAS PANTELLERIENSE (DSMZ Medium 752) Composition: NaCl 100.0 g/l Yeast extract 10.0 g/l Na2CO3 3.0 g/l Na2-citrate 3.0 g/l KCl 2.0 g/l MgSO4 x 7 H2O 1.0 g/l MnCl2 x 4 H2O FeSO4 x 7 H2O Distilled water
39306MEDIUM 284 - for Halomonas pantellerienseyesSodium carbonate decahydrate (2.500 g);Distilled water make up to (1000.000ml);Sodium chloride (100.000 g);Potassium chloride (2.000 g);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Yeast extract (10.000 g);Citric acid (3.000 g);Solution1 -M05
121532CIP Medium 284yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=284

culture temp

@refgrowthtypetemperaturerange
3675positivegrowth30-35mesophilic
39306positivegrowth30mesophilic
121532positivegrowth5-41
121532nogrowth45thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.965

halophily

@refsaltgrowthtested relationconcentration
121532NaClpositivegrowth2-10 %
121532NaClnogrowth0 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1215324853esculin-hydrolysis
121532606565hippurate+hydrolysis
12153217632nitrate-builds gas from
12153217632nitrate+reduction
12153216301nitrite-builds gas from
12153216301nitrite-reduction
12153215792malonate-assimilation
12153217234glucose-degradation

antibiotic resistance

  • @ref: 121532
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 121532
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12153215688acetoin-
12153217234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
121532oxidase+
121532beta-galactosidase-3.2.1.23
121532alcohol dehydrogenase-1.1.1.1
121532gelatinase-
121532amylase-
121532caseinase-3.4.21.50
121532catalase+1.11.1.6
121532tween esterase-
121532gamma-glutamyltransferase+2.3.2.2
121532lecithinase-
121532lipase-
121532lysine decarboxylase-4.1.1.18
121532ornithine decarboxylase-4.1.1.17
121532phenylalanine ammonia-lyase+4.3.1.24
121532tryptophan deaminase-
121532urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121532-+++-+-----+---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121532-+-+---+--+----------+-+--+--+-+-+-++------++-+++++-++------+-+++------+------+++-+-----+-+++++----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
3675hard sand of the lake of VenerePantelleria IslandItalyITAEurope
121532Environment, Hard sand of the lake of VenerePantelleria IslandItalyITAEurope1995

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Sandy

taxonmaps

  • @ref: 69479
  • File name: preview.99_6106.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2908;97_3577;98_4529;99_6106&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: X93493
  • Sequence Identity:
  • Total samples: 2168
  • soil counts: 108
  • aquatic counts: 856
  • animal counts: 1183
  • plant counts: 21

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
36751Risk group (German classification)
1215321Risk group (French classification)

Sequence information

16S sequences

  • @ref: 3675
  • description: H.pantelleriense 16S rRNA gene
  • accession: X93493
  • length: 1477
  • database: ena
  • NCBI tax ID: 48727

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas pantelleriensis AAPGCA_900102875scaffoldncbi48727
66792Halomonas pantelleriensis AAP2654587879draftimg48727

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.491no
flagellatedyes79.532no
gram-positiveno98.785no
anaerobicno98.229no
aerobicyes92.622no
halophileyes91.139no
spore-formingno96.386no
glucose-fermentno73.334no
thermophileno98.54yes
glucose-utilyes92.948no

External links

@ref: 3675

culture collection no.: DSM 9661, CIP 105506, ATCC 700273

straininfo link

  • @ref: 75515
  • straininfo: 13200

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21369975Halomonas alkalitolerans sp. nov., a novel moderately halophilic bacteriun isolated from soda meadow saline soil in Daqing, China.Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Wang Y, Song J, Fan JX, Meng XX, Zhang WJ Microbiol10.1007/s12275-011-0197-z2011Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Phylogeny24855014Halomonas qiaohouensis sp. nov., isolated from salt mine soil in southwest China.Wang YX, Xiao W, Dong MH, Zhao Q, Li ZY, Lai YH, Cui XLAntonie Van Leeuwenhoek10.1007/s10482-014-0189-12014Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salts, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Pathogenicity27329160Structural characterization of the lipid A from the LPS of the haloalkaliphilic bacterium Halomonas pantelleriensis.Carillo S, Pieretti G, Casillo A, Lindner B, Romano I, Nicolaus B, Parrilli M, Giuliano M, Cammarota M, Lanzetta R, Corsaro MMExtremophiles10.1007/s00792-016-0858-22016Cell Line, Tumor, Halomonas/*chemistry/immunology, Humans, Hydrogen-Ion Concentration, Hydrolysis, Lipid A/*chemistry/immunology

Reference

@idauthorscataloguedoi/urltitle
3675Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9661)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9661
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39306Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17532
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75515Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13200.1StrainInfo: A central database for resolving microbial strain identifiers
121532Curators of the CIPCollection of Institut Pasteur (CIP 105506)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105506