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Strain identifier

BacDive ID: 6029

Type strain: Yes

Species: Halomonas pantelleriensis

Strain Designation: AAP

Strain history: <- A. Gambacorta

NCBI tax ID(s): 48727 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3675

BacDive-ID: 6029

DSM-Number: 9661

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Halomonas pantelleriensis AAP is a mesophilic bacterium that was isolated from hard sand of the lake of Venere.

NCBI tax id

  • NCBI tax id: 48727
  • Matching level: species

strain history: <- A. Gambacorta

doi: 10.13145/bacdive6029.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas pantelleriensis
  • full scientific name: Halomonas pantelleriensis corrig. Romano et al. 1997
  • synonyms

    • @ref: 20215
    • synonym: Halomonas pantelleriense

@ref: 3675

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas pantelleriensis

full scientific name: Halomonas pantelleriensis Romano et al. 1997

strain designation: AAP

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes79.859
6948099.669negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3675HALOMONAS PANTELLERIENSE (DSMZ Medium 752)yeshttps://mediadive.dsmz.de/medium/752Name: HALOMONAS PANTELLERIENSE (DSMZ Medium 752) Composition: NaCl 100.0 g/l Yeast extract 10.0 g/l Na2CO3 3.0 g/l Na2-citrate 3.0 g/l KCl 2.0 g/l MgSO4 x 7 H2O 1.0 g/l MnCl2 x 4 H2O FeSO4 x 7 H2O Distilled water
39306MEDIUM 284 - for Halomonas pantellerienseyesSodium carbonate decahydrate (2.500 g);Distilled water make up to (1000.000ml);Sodium chloride (100.000 g);Potassium chloride (2.000 g);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Yeast extract (10.000 g);Citric acid (3.000 g);Solution1 -M05

culture temp

@refgrowthtypetemperaturerange
3675positivegrowth30-35mesophilic
39306positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.582

halophily

  • @ref: 69480
  • halophily level: halophilic
  • confidence: 94.236

Isolation, sampling and environmental information

isolation

  • @ref: 3675
  • sample type: hard sand of the lake of Venere
  • geographic location: Pantelleria Island
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Sandy

taxonmaps

  • @ref: 69479
  • File name: preview.99_6106.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2908;97_3577;98_4529;99_6106&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: X93493
  • Sequence Identity:
  • Total samples: 2168
  • soil counts: 108
  • aquatic counts: 856
  • animal counts: 1183
  • plant counts: 21

Safety information

risk assessment

  • @ref: 3675
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3675
  • description: H.pantelleriense 16S rRNA gene
  • accession: X93493
  • length: 1477
  • database: ena
  • NCBI tax ID: 48727

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas pantelleriensis AAPGCA_900102875scaffoldncbi48727
66792Halomonas pantelleriensis AAP2654587879draftimg48727

External links

@ref: 3675

culture collection no.: DSM 9661

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/49571

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21369975Halomonas alkalitolerans sp. nov., a novel moderately halophilic bacteriun isolated from soda meadow saline soil in Daqing, China.Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Wang Y, Song J, Fan JX, Meng XX, Zhang WJ Microbiol10.1007/s12275-011-0197-z2011Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Phylogeny24855014Halomonas qiaohouensis sp. nov., isolated from salt mine soil in southwest China.Wang YX, Xiao W, Dong MH, Zhao Q, Li ZY, Lai YH, Cui XLAntonie Van Leeuwenhoek10.1007/s10482-014-0189-12014Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salts, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Pathogenicity27329160Structural characterization of the lipid A from the LPS of the haloalkaliphilic bacterium Halomonas pantelleriensis.Carillo S, Pieretti G, Casillo A, Lindner B, Romano I, Nicolaus B, Parrilli M, Giuliano M, Cammarota M, Lanzetta R, Corsaro MMExtremophiles10.1007/s00792-016-0858-22016Cell Line, Tumor, Halomonas/*chemistry/immunology, Humans, Hydrogen-Ion Concentration, Hydrolysis, Lipid A/*chemistry/immunology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3675Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9661)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9661
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39306Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17532
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)