Strain identifier
BacDive ID: 6029
Type strain:
Species: Halomonas pantelleriensis
Strain Designation: AAP
Strain history: CIP <- 1998, DSMZ <- A. Gambacorta, ICB Insituto di Chimica Biomolecolare, Naples, Italy: strain AAP
NCBI tax ID(s): 48727 (species)
General
@ref: 3675
BacDive-ID: 6029
DSM-Number: 9661
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Halomonas pantelleriensis AAP is a mesophilic, motile bacterium that was isolated from hard sand of the lake of Venere.
NCBI tax id
- NCBI tax id: 48727
- Matching level: species
strain history
@ref | history |
---|---|
3675 | <- A. Gambacorta |
121532 | CIP <- 1998, DSMZ <- A. Gambacorta, ICB Insituto di Chimica Biomolecolare, Naples, Italy: strain AAP |
doi: 10.13145/bacdive6029.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas pantelleriensis
- full scientific name: Halomonas pantelleriensis corrig. Romano et al. 1997
synonyms
@ref synonym 20215 Franzmannia pantelleriensis 20215 Halomonas pantelleriense
@ref: 3675
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas pantelleriensis
full scientific name: Halomonas pantelleriensis Romano et al. 1997
strain designation: AAP
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 98.614 | ||
69480 | 99.997 | negative | ||
121532 | yes | negative | rod-shaped |
colony morphology
- @ref: 121532
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3675 | HALOMONAS PANTELLERIENSE (DSMZ Medium 752) | yes | https://mediadive.dsmz.de/medium/752 | Name: HALOMONAS PANTELLERIENSE (DSMZ Medium 752) Composition: NaCl 100.0 g/l Yeast extract 10.0 g/l Na2CO3 3.0 g/l Na2-citrate 3.0 g/l KCl 2.0 g/l MgSO4 x 7 H2O 1.0 g/l MnCl2 x 4 H2O FeSO4 x 7 H2O Distilled water |
39306 | MEDIUM 284 - for Halomonas pantelleriense | yes | Sodium carbonate decahydrate (2.500 g);Distilled water make up to (1000.000ml);Sodium chloride (100.000 g);Potassium chloride (2.000 g);Magnesium sulphate heptahydrate (1.000 g);Agar (15.000 g);Yeast extract (10.000 g);Citric acid (3.000 g);Solution1 -M05 | |
121532 | CIP Medium 284 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=284 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3675 | positive | growth | 30-35 | mesophilic |
39306 | positive | growth | 30 | mesophilic |
121532 | positive | growth | 5-41 | |
121532 | no | growth | 45 | thermophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.965 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
121532 | NaCl | positive | growth | 2-10 % |
121532 | NaCl | no | growth | 0 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
121532 | 4853 | esculin | - | hydrolysis |
121532 | 606565 | hippurate | + | hydrolysis |
121532 | 17632 | nitrate | - | builds gas from |
121532 | 17632 | nitrate | + | reduction |
121532 | 16301 | nitrite | - | builds gas from |
121532 | 16301 | nitrite | - | reduction |
121532 | 15792 | malonate | - | assimilation |
121532 | 17234 | glucose | - | degradation |
antibiotic resistance
- @ref: 121532
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
- @ref: 121532
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
121532 | 15688 | acetoin | - | |
121532 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
121532 | oxidase | + | |
121532 | beta-galactosidase | - | 3.2.1.23 |
121532 | alcohol dehydrogenase | - | 1.1.1.1 |
121532 | gelatinase | - | |
121532 | amylase | - | |
121532 | caseinase | - | 3.4.21.50 |
121532 | catalase | + | 1.11.1.6 |
121532 | tween esterase | - | |
121532 | gamma-glutamyltransferase | + | 2.3.2.2 |
121532 | lecithinase | - | |
121532 | lipase | - | |
121532 | lysine decarboxylase | - | 4.1.1.18 |
121532 | ornithine decarboxylase | - | 4.1.1.17 |
121532 | phenylalanine ammonia-lyase | + | 4.3.1.24 |
121532 | tryptophan deaminase | - | |
121532 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121532 | - | + | + | + | - | + | - | - | - | - | - | + | - | - | - | + | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121532 | - | + | - | + | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | + | - | - | + | - | + | - | + | - | + | + | - | - | - | - | - | - | + | + | - | + | + | + | + | + | - | + | + | - | - | - | - | - | - | + | - | + | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | + | + | + | - | + | - | - | - | - | - | + | - | + | + | + | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
3675 | hard sand of the lake of Venere | Pantelleria Island | Italy | ITA | Europe | |
121532 | Environment, Hard sand of the lake of Venere | Pantelleria Island | Italy | ITA | Europe | 1995 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Terrestrial | #Sandy |
taxonmaps
- @ref: 69479
- File name: preview.99_6106.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2908;97_3577;98_4529;99_6106&stattab=map
- Last taxonomy: Halomonas
- 16S sequence: X93493
- Sequence Identity:
- Total samples: 2168
- soil counts: 108
- aquatic counts: 856
- animal counts: 1183
- plant counts: 21
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3675 | 1 | Risk group (German classification) |
121532 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 3675
- description: H.pantelleriense 16S rRNA gene
- accession: X93493
- length: 1477
- database: ena
- NCBI tax ID: 48727
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Halomonas pantelleriensis AAP | GCA_900102875 | scaffold | ncbi | 48727 |
66792 | Halomonas pantelleriensis AAP | 2654587879 | draft | img | 48727 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 91.491 | no |
flagellated | yes | 79.532 | no |
gram-positive | no | 98.785 | no |
anaerobic | no | 98.229 | no |
aerobic | yes | 92.622 | no |
halophile | yes | 91.139 | no |
spore-forming | no | 96.386 | no |
glucose-ferment | no | 73.334 | no |
thermophile | no | 98.54 | yes |
glucose-util | yes | 92.948 | no |
External links
@ref: 3675
culture collection no.: DSM 9661, CIP 105506, ATCC 700273
straininfo link
- @ref: 75515
- straininfo: 13200
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21369975 | Halomonas alkalitolerans sp. nov., a novel moderately halophilic bacteriun isolated from soda meadow saline soil in Daqing, China. | Wang S, Yang Q, Liu ZH, Sun L, Wei D, Zhang JZ, Song JZ, Wang Y, Song J, Fan JX, Meng XX, Zhang W | J Microbiol | 10.1007/s12275-011-0197-z | 2011 | Base Composition, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
Phylogeny | 24855014 | Halomonas qiaohouensis sp. nov., isolated from salt mine soil in southwest China. | Wang YX, Xiao W, Dong MH, Zhao Q, Li ZY, Lai YH, Cui XL | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0189-1 | 2014 | Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salts, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
Pathogenicity | 27329160 | Structural characterization of the lipid A from the LPS of the haloalkaliphilic bacterium Halomonas pantelleriensis. | Carillo S, Pieretti G, Casillo A, Lindner B, Romano I, Nicolaus B, Parrilli M, Giuliano M, Cammarota M, Lanzetta R, Corsaro MM | Extremophiles | 10.1007/s00792-016-0858-2 | 2016 | Cell Line, Tumor, Halomonas/*chemistry/immunology, Humans, Hydrogen-Ion Concentration, Hydrolysis, Lipid A/*chemistry/immunology |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
3675 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9661) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9661 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
39306 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17532 | ||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
75515 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13200.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
121532 | Curators of the CIP | Collection of Institut Pasteur (CIP 105506) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105506 |