Strain identifier
BacDive ID: 6002
Type strain: 
Species: Cobetia marina
Strain history: IAM 14107 <-- ATCC 25374 <-- A. B. Cobet ("Arthrobacter marinus") <-- G. Jones <-- C. Wirsen.
NCBI tax ID(s): 28258 (species)
version 7.1 (current version)
General
@ref: 1747
BacDive-ID: 6002
DSM-Number: 4741
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Cobetia marina DSM 4741 is a mesophilic bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 28258
- Matching level: species
strain history
doi: 10.13145/bacdive6002.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Cobetia
- species: Cobetia marina
- full scientific name: Cobetia marina (Cobet et al. 1970) Arahal et al. 2002
synonyms
@ref synonym 20215 Pseudomonas marina 20215 Halomonas marina 20215 Arthrobacter marinus 20215 Halomonas halodurans 20215 Deleya marina
@ref: 1747
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Cobetia
species: Cobetia marina
full scientific name: Cobetia marina (Cobet et al. 1970) Arahal et al. 2002 emend. Romanenko et al. 2013
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 55.67 | |
| 69480 | 99.425 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1747 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 39090 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1747 | positive | growth | 26 | mesophilic |
| 39090 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.895
halophily
- @ref: 69480
- halophily level: halophilic
- confidence: 96.274
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 1747 | seawater | ||||
| 67770 | Littoral water sample at Woods Hole | MA | USA | USA | North America |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_895.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_532;97_613;98_707;99_895&stattab=map
- Last taxonomy: Cobetia
- 16S sequence: NR_042065
- Sequence Identity:
- Total samples: 19571
- soil counts: 974
- aquatic counts: 12909
- animal counts: 5462
- plant counts: 226
Safety information
risk assessment
- @ref: 1747
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Deleya marina (ATCC 25374) 16S ribosomal RNA (16S rRNA) gene | M93354 | 1483 | ena | 28258 |
| 1747 | Halomonas marina partial 16S rRNA gene, strain DSM 4741 | AJ306890 | 1536 | ena | 28258 |
| 1747 | Cobetia marina strain DSM 4741 16S ribosomal RNA, partial sequence | NR_042065 | 1536 | nuccore | 28258 |
| 67770 | Cobetia marina gene for 16S rRNA, partial sequence, strain: NBRC 102605 | AB681880 | 1466 | ena | 28258 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cobetia marina JCM 21022 | GCA_001720485 | complete | ncbi | 28258 |
| 66792 | Cobetia marina strain JCM 21022 | 28258.9 | complete | patric | 28258 |
| 66792 | Cobetia sp. MM1IDA2H-1 strain MM1IDA2H-1AD | 1268241.8 | wgs | patric | 1268241 |
| 66792 | Cobetia marina JCM 21022 | 2751185720 | complete | img | 28258 |
| 67770 | Cobetia marina strain JCM 21022 chromosome, complete genome | CP017114 | ena | 28258 | |
| 66792 | [Eubacterium] rectale BIOML-A12 | GCA_009680175 | scaffold | patric | 39491 |
| 66792 | Campylobacter concisus MGYG-HGUT-01392 | GCA_902374575 | scaffold | patric | 199 |
GC content
- @ref: 67770
- GC-content: 63.3
External links
@ref: 1747
culture collection no.: DSM 4741, ATCC 25374, JCM 21022, CCUG 49558, CECT 4278, CIP 104765, IAM 14107, LMG 2217, NBRC 102605, NCIMB 1877
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/8851 |
| 20218 | http://www.straininfo.net/strains/8849 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phenotype | 1781675 | Comparison of the adhesion properties of Deleya marina and the exopolysaccharide-defective mutant strain DMR. | Shea C, Nunley JW, Williamson JC, Smith-Somerville HE | Appl Environ Microbiol | 10.1128/aem.57.11.3107-3113.1991 | 1991 | Bacteria/genetics/ultrastructure, *Bacterial Adhesion, *Bacterial Physiological Phenomena, Colony Count, Microbial, Microscopy, Electron, Scanning, *Mutation, Phenotype, Polysaccharides, Bacterial/genetics/*physiology/ultrastructure | |
| Metabolism | 9271247 | N-acyl amino acid biosynthesis in marine bacterium, Deleya marina. | Yagi H, Corzo G, Nakahara T | Biochim Biophys Acta | 10.1016/s0304-4165(97)00009-3 | 1997 | Bacteria/*metabolism, Marine Biology, Ornithine/analogs & derivatives/*biosynthesis/chemistry, Protein Conformation, Seawater | |
| Enzymology | 9714788 | Novel diglycosyldiacylglycerol from the gram-negative bacterium Deleya marina. | Yagi H, Maruyama A | Biochim Biophys Acta | 10.1016/s0005-2760(98)00070-8 | 1998 | Glycolipids/chemistry/*isolation & purification, Gram-Negative Bacteria/*metabolism, Magnetic Resonance Spectroscopy/methods, *Water Microbiology | Phylogeny |
| Phylogeny | 12353874 | Proposal of Cobetia marina gen. nov., comb. nov., within the family Halomonadaceae, to include the species Halomonas marina. | Arahal DR, Castillo AM, Ludwig W, Schleifer KH, Ventosa A | Syst Appl Microbiol | 10.1078/0723-2020-00113 | 2002 | Base Sequence, Gammaproteobacteria/*classification, Halomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
| Pathogenicity | 17453727 | Combinatorial materials research applied to the development of new surface coatings III. Utilisation of a high-throughput multiwell plate screening method to rapidly assess bacterial biofilm retention on antifouling surfaces. | Stafslien S, Daniels J, Chisholm B, Christianson D | Biofouling | 10.1080/08927010601127311 | 2007 | Bacteria/drug effects/*isolation & purification, Bacterial Adhesion, Biofilms/drug effects/*growth & development, Coated Materials, Biocompatible, Disinfectants/pharmacology, Marine Biology, Materials Testing/methods, Polymethyl Methacrylate, Ships, Water Microbiology | Enzymology |
| Phylogeny | 19654339 | Cobetia crustatorum sp. nov., a novel slightly halophilic bacterium isolated from traditional fermented seafood in Korea. | Kim MS, Roh SW, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.008847-0 | 2009 | Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, *Fermentation, Halomonadaceae/*classification/genetics/*isolation & purification/metabolism, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seafood/*microbiology, Sodium Chloride/*metabolism | Metabolism |
| Phylogeny | 22427450 | Description of Cobetia amphilecti sp. nov., Cobetia litoralis sp. nov. and Cobetia pacifica sp. nov., classification of Halomonas halodurans as a later heterotypic synonym of Cobetia marina and emended descriptions of the genus Cobetia and Cobetia marina. | Romanenko LA, Tanaka N, Svetashev VI, Falsen E | Int J Syst Evol Microbiol | 10.1099/ijs.0.036863-0 | 2012 | Alaska, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Halomonadaceae/*classification/genetics/isolation & purification, Halomonas/classification/genetics/isolation & purification, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, *Water Microbiology | Enzymology |
| 24192832 | Inhibition of larval barnacle attachment to bacterial films: An investigation of physical properties. | Maki JS, Rittschof D, Mitchell R | Microb Ecol | 10.1007/BF00165910 | 1992 | |||
| Metabolism | 34930259 | High natural PHA production from acetate in Cobetia sp. MC34 and Cobetia marina DSM 4741(T) and in silico analyses of the genus specific PhaC2 polymerase variant. | Christensen M, Jablonski P, Altermark B, Irgum K, Hansen H | Microb Cell Fact | 10.1186/s12934-021-01713-0 | 2021 | Acetates/metabolism, Bacterial Proteins/metabolism, Halomonadaceae/*genetics/*metabolism, Metabolic Engineering/*methods, Phylogeny, Polyhydroxyalkanoates/analysis/*biosynthesis | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1747 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4741) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4741 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 39090 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16709 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |