Strain identifier
BacDive ID: 5997
Type strain:
Species: Chromohalobacter israelensis
Strain Designation: Ba1, Ba1, 1-13-31
Strain history: CIP <- 1998, R.H. Vreeland, West Chester Univ., USA: strain 1-13-31
NCBI tax ID(s): 141390 (species)
General
@ref: 2807
BacDive-ID: 5997
DSM-Number: 6768
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped
description: Chromohalobacter israelensis Ba1 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Halomonadaceae.
NCBI tax id
- NCBI tax id: 141390
- Matching level: species
strain history
@ref | history |
---|---|
2807 | <- ATCC |
120285 | CIP <- 1998, R.H. Vreeland, West Chester Univ., USA: strain 1-13-31 |
doi: 10.13145/bacdive5997.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Chromohalobacter
- species: Chromohalobacter israelensis
- full scientific name: Chromohalobacter israelensis (Huval et al. 1996) Arahal et al. 2001
synonyms
- @ref: 20215
- synonym: Halomonas israelensis
@ref: 2807
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Chromohalobacter
species: Chromohalobacter israelensis
full scientific name: Chromohalobacter israelensis (Huval et al. 1996) Arahal et al. 2001
strain designation: Ba1, Ba1, 1-13-31
type strain: yes
Morphology
cell morphology
- @ref: 120285
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
2807 | 10% MH MEDIUM (DSMZ Medium 593) | yes | https://mediadive.dsmz.de/medium/593 | Name: 10% MH MEDIUM (DSMZ Medium 593) Composition: NaCl 81.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l MgSO4 9.6 g/l MgCl2 7.0 g/l Proteose peptone no. 3 5.0 g/l KCl 2.0 g/l Glucose 1.0 g/l CaCl2 0.36 g/l NaHCO3 0.06 g/l NaBr 0.026 g/l Distilled water |
39318 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
120285 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
2807 | positive | growth | 37 | mesophilic |
39318 | positive | growth | 30 | mesophilic |
120285 | positive | growth | 15-41 | |
120285 | no | growth | 5 | psychrophilic |
120285 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 120285
- oxygen tolerance: obligate aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
120285 | NaCl | positive | growth | 6-10 % |
120285 | NaCl | no | growth | 0 % |
120285 | NaCl | no | growth | 2 % |
120285 | NaCl | no | growth | 4 % |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | - | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | - | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
120285 | esculin | - | hydrolysis | 4853 |
120285 | hippurate | - | hydrolysis | 606565 |
120285 | nitrate | + | reduction | 17632 |
120285 | nitrite | - | reduction | 16301 |
120285 | malonate | - | assimilation | 15792 |
120285 | nitrate | - | respiration | 17632 |
metabolite production
- @ref: 120285
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
120285 | oxidase | - | |
120285 | beta-galactosidase | - | 3.2.1.23 |
120285 | alcohol dehydrogenase | - | 1.1.1.1 |
120285 | gelatinase | - | |
120285 | amylase | - | |
120285 | caseinase | - | 3.4.21.50 |
120285 | catalase | + | 1.11.1.6 |
120285 | tween esterase | - | |
120285 | gamma-glutamyltransferase | + | 2.3.2.2 |
120285 | lecithinase | - | |
120285 | lipase | - | |
120285 | lysine decarboxylase | - | 4.1.1.18 |
120285 | ornithine decarboxylase | - | 4.1.1.17 |
120285 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120285 | protease | - | |
120285 | tryptophan deaminase | - | |
120285 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120285 | - | + | + | - | - | + | + | - | - | - | + | + | - | - | - | + | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120285 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120285 | + | + | + | - | + | + | - | + | - | + | + | - | - | - | - | - | - | - | - | + | + | + | - | - | - | - | + | - | + | + | - | + | - | + | - | + | + | + | - | + | + | - | + | + | + | - | - | - | + | + | + | - | - | + | + | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + | - | + | - | + | - | - | - | + | + | - | + | - | - | - | - | - | + | - | + | + | + | + | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | country | origin.country | continent | sample type |
---|---|---|---|---|
39318 | Israel | ISR | Asia | |
2807 | Israel | ISR | Asia | Dead Sea |
120285 | Israel | ISR | Asia | Environment, Water, Dead sea |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | |
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Marine |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_4319.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_1010;97_1176;98_3251;99_4319&stattab=map
- Last taxonomy: Chromohalobacter
- 16S sequence: AJ295144
- Sequence Identity:
- Total samples: 1588
- soil counts: 65
- aquatic counts: 1028
- animal counts: 412
- plant counts: 83
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
2807 | 1 | Risk group (German classification) |
120285 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Chromohalobacter israelensis 16S rRNA gene, strain ATCC 43985 T | AJ295144 | 1532 | ena | 141390 |
2807 | Chromohalobacter israelensis 16S ribosomal RNA gene, partial sequence | AF211862 | 1492 | ena | 141390 |
Genome sequences
- @ref: 66792
- description: Chromohalobacter israelensis DSM 6768
- accession: GCA_029478115
- assembly level: contig
- database: ncbi
- NCBI tax ID: 141390
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 93.066 | no |
flagellated | no | 54.515 | no |
gram-positive | no | 98.598 | no |
anaerobic | no | 99.389 | no |
aerobic | yes | 92.131 | no |
halophile | yes | 93.884 | no |
spore-forming | no | 96.769 | no |
glucose-ferment | no | 60.561 | no |
thermophile | no | 98.84 | yes |
glucose-util | yes | 93.264 | no |
External links
@ref: 2807
culture collection no.: DSM 6768, ATCC 43985, CIP 105572
straininfo link
- @ref: 75486
- straininfo: 13197
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 8542554 | Description of two new species of Halomonas: Halomonas israelensis sp.nov. and Halomonas canadensis sp.nov. | Huval JH, Latta R, Wallace R, Kushner DJ, Vreeland RH | Can J Microbiol | 10.1139/m95-156 | 1995 | Culture Media/chemistry, Gram-Negative Aerobic Bacteria/*classification/enzymology/genetics/*growth & development, Microbial Sensitivity Tests, Sodium Chloride, Species Specificity | Cultivation |
Phylogeny | 11491344 | Transfer of Halomonas canadensis and Halomonas israelensis to the genus Chromohalobacter as Chromohalobacter canadensis comb. nov. and Chromohalobacter israelensis comb. nov.. | Arahal DR, Garcia MT, Ludwig W, Schleifer KH, Ventosa A | Int J Syst Evol Microbiol | 10.1099/00207713-51-4-1443 | 2001 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Gammaproteobacteria/*classification/*genetics/metabolism, Halomonas/*classification/*genetics/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity | Metabolism |
Phylogeny | 25180007 | Larsenia salina gen. nov., sp. nov., a new member of the family Halomonadaceae based on multilocus sequence analysis. | Leon MJ, Sanchez-Porro C, de la Haba RR, Llamas I, Ventosa A | Syst Appl Microbiol | 10.1016/j.syapm.2014.07.006 | 2014 | Aerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Halomonadaceae/*classification/*genetics/isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, *Multilocus Sequence Typing, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Spain, Temperature | Genetics |
Genetics | 25481275 | Investigation of mercury tolerance in Chromohalobacter israelensis DSM 6768T and Halomonas zincidurans B6T by comparative genomics with Halomonas xinjiangensis TRM 0175T. | Zhou P, Huo YY, Xu L, Wu YH, Meng FX, Wang CS, Xu XW | Mar Genomics | 10.1016/j.margen.2014.11.008 | 2014 | Atlantic Ocean, Base Sequence, Chromohalobacter/*drug effects/*genetics, Dose-Response Relationship, Drug, Drug Tolerance/*genetics, Halomonas/*drug effects/*genetics, Mercury/*toxicity, Microbial Sensitivity Tests, Molecular Sequence Annotation, Molecular Sequence Data, Sequence Analysis, DNA, Species Specificity | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2807 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6768) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6768 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39318 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17606 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
75486 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13197.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120285 | Curators of the CIP | Collection of Institut Pasteur (CIP 105572) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105572 |