Strain identifier
BacDive ID: 5993
Type strain: 
Species: Fuchsiella alkaliacetigena
Strain Designation: Z-7100, Z7100
Strain history: <- T. Zhilina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-7100
NCBI tax ID(s): 957042 (species)
version 8.1 (current version)
General
@ref: 17795
BacDive-ID: 5993
DSM-Number: 24880
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, Gram-negative, motile, rod-shaped
description: Fuchsiella alkaliacetigena Z-7100 is an anaerobe, spore-forming, Gram-negative bacterium that was isolated from bottom sediments of soda lake Tanatar III.
NCBI tax id
- NCBI tax id: 957042
- Matching level: species
strain history
- @ref: 17795
- history: <- T. Zhilina, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; Z-7100
doi: 10.13145/bacdive5993.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Halanaerobiales
- family: Halobacteroidaceae
- genus: Fuchsiella
- species: Fuchsiella alkaliacetigena
- full scientific name: Fuchsiella alkaliacetigena Zhilina et al. 2012
@ref: 17795
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Halanaerobiales
family: Halobacteroidaceae
genus: Fuchsiella
species: Fuchsiella alkaliacetigena
full scientific name: Fuchsiella alkaliacetigena Zhilina et al. 2012
strain designation: Z-7100, Z7100
type strain: yes
Morphology
cell morphology
- @ref: 30358
- gram stain: negative
- cell length: 20 µm
- cell width: 0.35 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 17795
- incubation period: 8-14 days
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30358 | positive | growth | 25-45 | |
| 30358 | positive | optimum | 40 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30358 | positive | growth | 8.5-10.5 | alkaliphile |
| 30358 | positive | optimum | 9 |
Physiology and metabolism
oxygen tolerance
- @ref: 30358
- oxygen tolerance: anaerobe
spore formation
- @ref: 30358
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30358 | NaCl | positive | growth | 0-14 % |
| 30358 | NaCl | positive | optimum | 7.75 % |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30358 | 16236 | ethanol | + | carbon source |
| 30358 | 24996 | lactate | + | carbon source |
| 30358 | 15361 | pyruvate | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 17795
- sample type: bottom sediments of soda lake Tanatar III
- geographic location: Kulunda Steppe, West Siberia
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_83778.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2023;96_8694;97_10453;98_12810;99_83778&stattab=map
- Last taxonomy: Fuchsiella alkaliacetigena
- 16S sequence: HQ828140
- Sequence Identity:
- Total samples: 35
- soil counts: 6
- aquatic counts: 29
Safety information
risk assessment
- @ref: 17795
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17795
- description: Fuchsiella alkaliacetigena strain Z-7100 16S ribosomal RNA gene, partial sequence
- accession: HQ828140
- length: 1491
- database: ena
- NCBI tax ID: 957042
Genome sequences
- @ref: 66792
- description: Fuchsiella alkaliacetigena Z-7100
- accession: GCA_023227765
- assembly level: contig
- database: ncbi
- NCBI tax ID: 957042
GC content
| @ref | GC-content | method |
|---|---|---|
| 17795 | 32.0 | thermal denaturation, midpoint method (Tm) |
| 30358 | 32 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 69.679 | no |
| gram-positive | no | 96.518 | yes |
| anaerobic | yes | 99.114 | yes |
| aerobic | no | 97.019 | yes |
| halophile | no | 55.639 | yes |
| spore-forming | no | 52.141 | no |
| motile | yes | 88.045 | yes |
| glucose-ferment | no | 75.711 | no |
| thermophile | no | 59.421 | no |
| glucose-util | yes | 73.004 | no |
External links
@ref: 17795
culture collection no.: DSM 24880, VKM B-2667
straininfo link
- @ref: 75482
- straininfo: 400216
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21908678 | Fuchsiella alkaliacetigena gen. nov., sp. nov., an alkaliphilic, lithoautotrophic homoacetogen from a soda lake. | Zhilina TN, Zavarzina DG, Panteleeva AN, Osipov GA, Kostrikina NA, Tourova TP, Zavarzin GA | Int J Syst Evol Microbiol | 10.1099/ijs.0.034363-0 | 2011 | Anaerobiosis, Autotrophic Processes, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/metabolism, Hydrogen/metabolism, Hydrogen-Ion Concentration, Lakes, Microscopy, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature | Metabolism |
| Phylogeny | 25908709 | Fuchsiella ferrireducens sp. nov., a novel haloalkaliphilic, lithoautotrophic homoacetogen capable of iron reduction, and emendation of the description of the genus Fuchsiella. | Zhilina TN, Zavarzina DG, Detkova EN, Patutina EO, Kuznetsov BB | Int J Syst Evol Microbiol | 10.1099/ijs.0.000278 | 2015 | Base Composition, Chemoautotrophic Growth, DNA, Bacterial/genetics, Fatty Acids/chemistry, Firmicutes/*classification/genetics/isolation & purification, Hydrogen-Ion Concentration, Iron/*metabolism, Lakes/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, *Water Microbiology | Genetics |
| Genetics | 35913143 | Draft Genome Sequence of the Alkaliphilic, Lithoautotrophic Homoacetogen Fuchsiella alkaliacetigena Z-7100(T). | Huang Y, Nobu MK, Igarashi K, Kato S | Microbiol Resour Announc | 10.1128/mra.00471-22 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17795 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24880) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24880 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30358 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26698 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75482 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400216.1 | StrainInfo: A central database for resolving microbial strain identifiers |