Strain identifier

BacDive ID: 5971

Type strain: Yes

Species: Haladaptatus paucihalophilus

Strain Designation: DX253

Strain history: K. N. Savage DX253.

NCBI tax ID(s): 797209 (strain), 367189 (species)

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General

@ref: 7419

BacDive-ID: 5971

DSM-Number: 18195

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Haladaptatus paucihalophilus DX253 is a mesophilic archaeon that was isolated from low-salt, sulfide- and sulfur-rich spring.

NCBI tax id

NCBI tax idMatching level
367189species
797209strain

strain history

@refhistory
7419<- K. N. Savage, Dept. Botany and Microbiol., Univ. Oklahoma, USA; DX253
67770K. N. Savage DX253.

doi: 10.13145/bacdive5971.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halobacteriaceae
  • genus: Haladaptatus
  • species: Haladaptatus paucihalophilus
  • full scientific name: Haladaptatus paucihalophilus Savage et al. 2007

@ref: 7419

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Haladaptatus

species: Haladaptatus paucihalophilus

full scientific name: Haladaptatus paucihalophilus Savage et al. 2007

strain designation: DX253

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7419
  • name: HALOPHILIC MEDIUM (DSMZ Medium 1125)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1125
  • composition: Name: HALOPHILIC MEDIUM (DSMZ Medium 1125) Composition: NaCl 180.0 g/l MgCl2 x 6 H2O 20.0 g/l HEPES 6.0 g/l K2SO4 5.0 g/l Sucrose 0.5 g/l NH4Cl 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Yeast extract 0.1 g/l KH2PO4 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7419positivegrowth30mesophilic
67770positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7419low-salt, sulfide- and sulfur-rich springsouth-western Oklahoma, Zodletone SpringUSAUSANorth America
67770Low-salt, sulfide- and sulfur-rich spring (Zodletone Spring)south-west OklahomaUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Spring
#Condition#Sulfuric

Safety information

risk assessment

  • @ref: 7419
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haladaptatus paucihalophilus gene for 16S ribosomal RNA, partial sequence, strain: JCM 13897AB4779861433ena797209
20218Haladaptatus paucihalophilus gene for 16S rRNA, complete sequence, strain: JCM 13897AB6633471473ena797209
20218Haladaptatus paucihalophilus DX253 strain JCM 13897 16S ribosomal RNA gene, partial sequenceHM1596091473ena797209
7419Haladaptatus paucihalophilus strain DX253 16S ribosomal RNA gene, partial sequenceDQ3449731352ena797209
7419Haladaptatus paucihalophilus strain DX253 16S ribosomal RNA gene, partial sequenceDQ3449741262ena797209

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haladaptatus paucihalophilus DX253GCA_900142335contigncbi797209
66792Haladaptatus paucihalophilus DX253GCA_000187225contigncbi797209
66792Haladaptatus paucihalophilus DSM 181952698536698draftimg797209
66792Haladaptatus paucihalophilus DX253649989953draftimg797209
66792Haladaptatus paucihalophilus DX2532516653072draftimg797209
66792Haladaptatus paucihalophilus DX2532507262000draftimg797209
67770Haladaptatus paucihalophilus DX253GCA_000376445contigncbi797209
66792Haladaptatus paucihalophilus DX253797209.5wgspatric797209
66792Haladaptatus paucihalophilus DX253797209.4wgspatric797209
66792Haladaptatus paucihalophilus DX253797209.40wgspatric797209

GC content

  • @ref: 7419
  • GC-content: 60.5

External links

@ref: 7419

culture collection no.: DSM 18195, ATCC BAA 1313, JCM 13897, KCTC 4006, CGMCC 1.8953

straininfo link

  • @ref: 75460
  • straininfo: 297215

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17220434Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring.Savage KN, Krumholz LR, Oren A, Elshahed MSInt J Syst Evol Microbiol10.1099/ijs.0.64464-02007DNA, Archaeal/analysis, Fresh Water/chemistry/*microbiology, Genes, rRNA, Halobacteriaceae/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Oklahoma, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*metabolism, Sulfides/*metabolismGenetics
Phylogeny19666806Haladaptatus litoreus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haladaptatus.Cui HL, Sun FF, Gao X, Dong Y, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJInt J Syst Evol Microbiol10.1099/ijs.0.015933-02009Base Composition, China, DNA, Archaeal/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Halobacteriaceae/chemistry/*classification/genetics/*isolation & purification, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, *Sodium Chloride, Species Specificity, TemperatureGenetics
Phylogeny19667394Haladaptatus cibarius sp. nov., an extremely halophilic archaeon from seafood, and emended description of the genus Haladaptatus.Roh SW, Lee ML, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.013037-02009Animals, Base Composition, DNA, Archaeal/analysis, DNA, Ribosomal/analysis, Fermentation, Genes, rRNA, Genotype, Halobacteriaceae/*classification/genetics/*isolation & purification/physiology, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seafood/*microbiology, Sequence Analysis, DNA, Shellfish/*microbiology, *Sodium Chloride, Species SpecificityGenetics
Phylogeny25190334Haladaptatus pallidirubidus sp. nov., a halophilic archaeon isolated from saline soil samples in Yunnan and Xinjiang, China.Liu BB, Zhao WY, Chu X, Hozzein WN, Prabhu DM, Wadaan MA, Tang SK, Zhang LL, Li WJAntonie Van Leeuwenhoek10.1007/s10482-014-0259-42014Aerobiosis, Archaea/chemistry/*classification/genetics/*isolation & purification, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Glycolipids/analysis, Hydrogen-Ion Concentration, Microbiological Techniques, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7419Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18195)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18195
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75460Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297215.1StrainInfo: A central database for resolving microbial strain identifiers