Strain identifier
BacDive ID: 5941
Type strain: 
Species: Halorubrum lacusprofundi
Strain history: 1994, W.E. Kloos: strain DBM 388
NCBI tax ID(s): 2247 (species)
version 8.1 (current version)
General
@ref: 1913
BacDive-ID: 5941
DSM-Number: 5037
keywords: 16S sequence, Archaea, mesophilic
description: Halorubrum lacusprofundi DSM 5037 is a mesophilic archaeon that was isolated from sediment-water interface.
NCBI tax id
- NCBI tax id: 2247
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1913 | <- P.D. Franzmann, ACAM 32 |
| 41359 | 1994, W.E. Kloos: strain DBM 388 |
doi: 10.13145/bacdive5941.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Haloferacales
- family: Halorubraceae
- genus: Halorubrum
- species: Halorubrum lacusprofundi
- full scientific name: Halorubrum lacusprofundi (Franzmann et al. 1989) McGenity and Grant 1996
synonyms
@ref synonym 20215 Halorubrobacterium lacusprofundi 20215 Halobacterium lacusprofundi
@ref: 1913
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halorubraceae
genus: Halorubrum
species: Halorubrum lacusprofundi
full scientific name: Halorubrum lacusprofundi (Franzmann et al. 1989) McGenity and Grant 1996
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1913 | HALOBACTERIA MEDIUM (DSMZ Medium 372) | yes | https://mediadive.dsmz.de/medium/372 | Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water |
| 1913 | HALOBACTERIUM LACUSPROFUNDII MEDIUM (DSMZ Medium 589) | yes | https://mediadive.dsmz.de/medium/589 | Name: HALOBACTERIUM LACUSPROFUNDII MEDIUM (DSMZ Medium 589) Composition: NaCl 181.0 g/l MgCl2 x 6 H2O 75.0 g/l Agar 15.0 g/l Sodium succinate 10.0 g/l MgSO4 x 7 H2O 7.4 g/l KCl 7.4 g/l CaCl2 x 2 H2O 1.0 g/l Yeast extract 1.0 g/l Biotin 0.0001 g/l Thiamine-HCl x 2 H2O 0.0001 g/l Vitamin B12 0.0001 g/l Distilled water |
| 41359 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1913 | positive | growth | 30 | mesophilic |
| 41359 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
- @ref: 1913
- sample type: sediment-water interface
- geographic location: Vestfold Hills, Deep Lake
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Sediment
Safety information
risk assessment
- @ref: 1913
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Halobacterium lacusprofundi 16S ribosomal RNA (part 1) | X53567 | 452 | ena | 2247 |
| 20218 | Halobacterium lacusprofundi 16S ribosomal RNA (part 2) | X53568 | 254 | ena | 2247 |
| 20218 | Halobacterium lacusprofundi 16S ribosomal RNA (part 3) | X53569 | 517 | ena | 2247 |
External links
@ref: 1913
culture collection no.: DSM 5037, ACAM 32, ATCC 49238
straininfo link
- @ref: 75428
- straininfo: 42374
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1913 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5037) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5037 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 41359 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15887 | ||||
| 75428 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID42374.1 | StrainInfo: A central database for resolving microbial strain identifiers |