Strain identifier

BacDive ID: 5935

Type strain: Yes

Species: Haloferax lucentense

Strain Designation: Aa 2.2

Strain history: CIP <- 2002, A. Ventosa, Sevilla Univ., Sevilla, Spain: strain Aa 2.2

NCBI tax ID(s): 1230452 (strain), 2254 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5606

BacDive-ID: 5935

DSM-Number: 14919

keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative, ovoid-shaped

description: Haloferax lucentense Aa 2.2 is a mesophilic, Gram-negative, ovoid-shaped archaeon that was isolated from water of a saltern.

NCBI tax id

NCBI tax idMatching level
2254species
1230452strain

strain history

@refhistory
5606<- A. Ventosa, Univ. of Sevilla; Aa 2.2 <- M. L. Dyall-Smith <- F. Rodríguez-Valera <- M. Torreblanca
337882002, A. Ventosa, Sevilla Univ., Sevilla, Spain: strain Aa 2.2
67770S. D. Nuttal <-- M. Torreblanca Aa 2.2.
120661CIP <- 2002, A. Ventosa, Sevilla Univ., Sevilla, Spain: strain Aa 2.2

doi: 10.13145/bacdive5935.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Haloferacaceae
  • genus: Haloferax
  • species: Haloferax lucentense
  • full scientific name: Haloferax lucentense corrig. Gutierrez et al. 2004
  • synonyms

    @refsynonym
    20215Haloferax alicantei
    20215Haloferax lucentensis

@ref: 5606

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloferacaceae

genus: Haloferax

species: Haloferax lucentense

full scientific name: Haloferax lucentense Gutierrez et al. 2004

strain designation: Aa 2.2

type strain: yes

Morphology

cell morphology

  • @ref: 120661
  • gram stain: negative
  • cell shape: ovoid-shaped
  • motility: no

colony morphology

  • @ref: 120661

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5606HALOBACTERIA MEDIUM (DSMZ Medium 372)yeshttps://mediadive.dsmz.de/medium/372Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
33788MEDIUM 204 - for Halorubrum, Marinococcus and NatrialbayesDistilled water make up to (1000.000 ml);Sodium chloride (200.000 g);Potassium chloride (2.000 g);ManganeseII chloride tetrahydrate (0.360 mg);Magnesium sulphate heptahydrate (20.000 g);Agar (20.000 g);Yeast extract (5.000 g);Ferrous chloride tetrahydrate
120661CIP Medium 204yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=204

culture temp

@refgrowthtypetemperaturerange
5606positivegrowth37mesophilic
33788positivegrowth37mesophilic
67770positivegrowth37mesophilic
120661positivegrowth37-41
120661nogrowth5psychrophilic
120661nogrowth15psychrophilic
120661nogrowth30mesophilic
120661nogrowth45thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
120661NaClnogrowth0 %
120661NaClnogrowth2 %
120661NaClnogrowth4 %
120661NaClnogrowth6 %
120661NaClnogrowth8 %
120661NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12066116947citrate-carbon source
1206614853esculin-hydrolysis
120661606565hippurate-hydrolysis
12066117632nitrate-reduction
12066116301nitrite-reduction
12066115792malonate-assimilation

metabolite production

  • @ref: 120661
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 120661
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
120661oxidase-
120661beta-galactosidase-3.2.1.23
120661alcohol dehydrogenase-1.1.1.1
120661gelatinase-
120661catalase+1.11.1.6
120661gamma-glutamyltransferase-2.3.2.2
120661lysine decarboxylase-4.1.1.18
120661ornithine decarboxylase-4.1.1.17
120661phenylalanine ammonia-lyase-4.3.1.24
120661tryptophan deaminase-
120661urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120661--++-+--------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
5606water of a salternAlicanteSpainESPEurope
67770Saltern in AlicanteSpainESPEurope
120661Environment, Water of a salternAlicanteSpainESPEurope1986

isolation source categories

Cat1Cat2
#Environmental#Aquatic
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187105.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17828;96_68792;97_89434;98_121704;99_187105&stattab=map
  • Last taxonomy: Haloferax
  • 16S sequence: AB663378
  • Sequence Identity:
  • Total samples: 8
  • soil counts: 1
  • aquatic counts: 7

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
56061Risk group (German classification)
1206611Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haloferax lucentense DSM 14919 strain Aa 2.2 16S ribosomal RNA gene, partial sequenceM33803394ena1230452
20218Haloferax lucentense DSM 14919 strain Aa 2.2 16S ribosomal RNA gene, partial sequenceM33804254ena1230452
20218Haloferax lucentense DSM 14919 strain Aa 2.2 16S ribosomal RNA gene, partial sequenceM33805539ena1230452
20218Haloferax lucentensis gene for 16S rRNAAB0817321473ena2254
5606Haloferax lucentense gene for 16S rRNA, complete sequence, strain: JCM 9276AB6633781473ena2254
67770Haloferax lucentense DSM 14919 strain Aa 2.2 16S ribosomal RNA genes, partial sequenceAH0036651387ena1230452

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloferax lucentense DSM 149192554235494draftimg1230452
67770Haloferax lucentense DSM 14919GCA_000336795contigncbi1230452
66792Haloferax lucentense DSM 149191230452.3wgspatric1230452

GC content

  • @ref: 67770
  • GC-content: 64.5
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 5606

culture collection no.: DSM 14919, CCM 7023, CECT 5871, CIP 107410, JCM 9276, CGMCC 1.2151, CGMCC 1.5396, CGMCC 1.6161, NCIMB 13854

straininfo link

  • @ref: 75418
  • straininfo: 65751

literature

  • topic: Phylogeny
  • Pubmed-ID: 12486456
  • title: Taxonomic characterization of Haloferax sp. (" H. alicantei") strain Aa 2.2: description of Haloferax lucentensis sp. nov.
  • authors: Gutierrez MC, Kamekura M, Holmes ML, Dyall-Smith ML, Ventosa A
  • journal: Extremophiles
  • DOI: 10.1007/s00792-002-0282-7
  • year: 2002
  • mesh: Bacterial Typing Techniques, Chromatography, Thin Layer, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Haloarcula/classification, Haloferax/*classification/genetics/growth & development/metabolism, Membrane Lipids/analysis, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Ribotyping, Spain
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5606Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14919)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14919
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33788Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4843
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75418Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID65751.1StrainInfo: A central database for resolving microbial strain identifiers
120661Curators of the CIPCollection of Institut Pasteur (CIP 107410)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107410