Strain identifier

BacDive ID: 5932

Type strain: Yes

Species: Haloferax mediterranei

Strain Designation: R-4

Culture col. no.: DSM 1411, ATCC 33500, CCM 3361

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General

@ref: 496

BacDive-ID: 5932

DSM-Number: 1411

keywords: Archaea, 16S sequence, genome sequence, mesophilic

description: Haloferax mediterranei R-4 is a mesophilic archaeon that was isolated from solar salt pond.

strain history: <- F. Rodriguez-Valera, R-4

doi: 10.13145/bacdive5932.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/euryarchaeota
  • domain: Archaea
  • phylum: Euryarchaeota
  • class: Halobacteria
  • order: Haloferacales
  • family: Haloferacaceae
  • genus: Haloferax
  • species: Haloferax mediterranei
  • full scientific name: Haloferax mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987
  • synonyms

    • @ref: 20215
    • synonym: Halobacterium mediterranei

@ref: 496

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloferacaceae

genus: Haloferax

species: Haloferax mediterranei

full scientific name: Haloferax mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987

strain designation: R-4

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
496HALOBACTERIA MEDIUM (DSMZ Medium 372)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium372.pdf
496HALOBACTERIUM MEDIUM (DSMZ Medium 97)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium97.pdf

culture temp

  • @ref: 496
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 496
  • sample type: solar salt pond
  • geographic location: near Alicante
  • country: Spain
  • origin.country: ESP
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Pond (small)
#Condition#Saline

Safety information

risk assessment

  • @ref: 496
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haloferax mediterranei 16S ribosomal RNA gene, partial sequence; tRNA-Ala gene, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF093412422ena523841
496Haloferax mediterranei gene for 16S rRNA, strain: ATCC 33500D111071472ena523841

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloferax mediterranei ATCC 33500 CGMCC 1.2087GCA_000306765completencbi523841
66792Haloferax mediterranei ATCC 33500GCA_005406325completencbi523841
66792Haloferax mediterranei ATCC 33500GCA_000685635chromosomencbi523841
66792Haloferax mediterranei ATCC 33500GCA_000337295contigncbi523841
66792Haloferax mediterranei ATCC 33500523841.20completepatric523841
66792Haloferax mediterranei ATCC 33500523841.21wgspatric523841
66792Haloferax mediterranei ATCC 33500523841.19completepatric523841
66792Haloferax mediterranei ATCC 33500523841.46completepatric523841
66792Haloferax mediterranei ATCC 33500 strain ATCC33500523841.41plasmidpatric523841
66792Haloferax mediterranei ATCC 33500 strain ATCC33500523841.40plasmidpatric523841
66792Haloferax mediterranei ATCC 33500 strain ATCC33500523841.39plasmidpatric523841
66792Haloferax mediterranei ATCC 33500 strain CGMCC 1.2087523841.36plasmidpatric523841
66792Haloferax mediterranei ATCC 33500 strain CGMCC 1.2087523841.38plasmidpatric523841
66792Haloferax mediterranei ATCC 33500 strain CGMCC 1.2087523841.37plasmidpatric523841

GC content

  • @ref: 496
  • GC-content: 60.0

External links

@ref: 496

culture collection no.: DSM 1411, ATCC 33500, CCM 3361

straininfo link

@refpassport
20218http://www.straininfo.net/strains/157316
20218http://www.straininfo.net/strains/109390
20218http://www.straininfo.net/strains/109392

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
496Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1411)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1411
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)