Strain identifier

BacDive ID: 5931

Type strain: Yes

Species: Haloferax gibbonsii

Strain Designation: Ma 2.38

Strain history: M. Kamekura <-- ATCC 33959 <-- G. Juez Ma-2.38.

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General

@ref: 1666

BacDive-ID: 5931

DSM-Number: 4427

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Haloferax gibbonsii Ma 2.38 is a mesophilic archaeon that was isolated from solar saltern.

NCBI tax id

NCBI tax idMatching level
1227459strain
35746species

strain history

@refhistory
1666<- B.J. Tindall <- F. Rodriguez-Valera <- G. Juez, Ma 2.38
67770M. Kamekura <-- ATCC 33959 <-- G. Juez Ma-2.38.

doi: 10.13145/bacdive5931.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Haloferacaceae
  • genus: Haloferax
  • species: Haloferax gibbonsii
  • full scientific name: Haloferax gibbonsii Juez et al. 1986

@ref: 1666

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloferacaceae

genus: Haloferax

species: Haloferax gibbonsii

full scientific name: Haloferax gibbonsii Juez et al. 1986

strain designation: Ma 2.38

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1666
  • name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/372
  • composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1666positivegrowth37mesophilic
67770positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
1666solar salternAlicanteSpainESPEurope
67770Solar saltern near AlicanteSpainESPEurope

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_187105.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17828;96_68792;97_89434;98_121704;99_187105&stattab=map
  • Last taxonomy: Haloferax
  • 16S sequence: AB663376
  • Sequence Identity:
  • Total samples: 8
  • soil counts: 1
  • aquatic counts: 7

Safety information

risk assessment

  • @ref: 1666
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haloferax gibbonsii gene for 16S rRNAD133781470ena35746
20218Haloferax gibbonsii gene for 16S rRNA, complete sequence, strain: JCM 8863AB6633761473ena35746

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloferax gibbonsii ATCC 339592554235501draftimg1227459
67770Haloferax gibbonsii ATCC 33959GCA_000336775contigncbi1227459
66792Haloferax gibbonsii ATCC 339591227459.3wgspatric1227459

GC content

@refGC-contentmethod
166661.8
6777061.8thermal denaturation, midpoint method (Tm)

External links

@ref: 1666

culture collection no.: DSM 4427, ATCC 33959, NCMB 2188, JCM 8863, CCM 3603, IAM 13646, NBRC 102184, NCIMB 2188, VKM B-1756

straininfo link

  • @ref: 75412
  • straininfo: 40786

literature

  • topic: Genetics
  • Pubmed-ID: 9720239
  • title: The structure of the exocellular polysaccharide produced by the Archaeon Haloferax gibbonsii (ATCC 33959).
  • authors: Paramonov NA, Parolis LA, Parolis H, Boan IF, Anton J, Rodriguez-Valera F
  • journal: Carbohydr Res
  • DOI: 10.1016/s0008-6215(98)00102-5
  • year: 1998
  • mesh: Carbohydrate Conformation, Carbohydrate Sequence, Carbohydrates/analysis, Haloferax/*chemistry, Hydrolysis, Methylation, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Oligosaccharides/*chemistry/isolation & purification, Polysaccharides/*chemistry/isolation & purification
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1666Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4427)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4427
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75412Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40786.1StrainInfo: A central database for resolving microbial strain identifiers