Strain identifier
BacDive ID: 5931
Type strain:
Species: Haloferax gibbonsii
Strain Designation: Ma 2.38
Strain history: M. Kamekura <-- ATCC 33959 <-- G. Juez Ma-2.38.
NCBI tax ID(s): 1227459 (strain), 35746 (species)
General
@ref: 1666
BacDive-ID: 5931
DSM-Number: 4427
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Haloferax gibbonsii Ma 2.38 is a mesophilic archaeon that was isolated from solar saltern.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1227459 | strain |
35746 | species |
strain history
@ref | history |
---|---|
1666 | <- B.J. Tindall <- F. Rodriguez-Valera <- G. Juez, Ma 2.38 |
67770 | M. Kamekura <-- ATCC 33959 <-- G. Juez Ma-2.38. |
doi: 10.13145/bacdive5931.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Haloferacales
- family: Haloferacaceae
- genus: Haloferax
- species: Haloferax gibbonsii
- full scientific name: Haloferax gibbonsii Juez et al. 1986
@ref: 1666
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Haloferacaceae
genus: Haloferax
species: Haloferax gibbonsii
full scientific name: Haloferax gibbonsii Juez et al. 1986
strain designation: Ma 2.38
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1666
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1666 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
1666 | solar saltern | Alicante | Spain | ESP | Europe |
67770 | Solar saltern near Alicante | Spain | ESP | Europe |
isolation source categories
- Cat1: #Condition
- Cat2: #Saline
taxonmaps
- @ref: 69479
- File name: preview.99_187105.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17828;96_68792;97_89434;98_121704;99_187105&stattab=map
- Last taxonomy: Haloferax
- 16S sequence: AB663376
- Sequence Identity:
- Total samples: 8
- soil counts: 1
- aquatic counts: 7
Safety information
risk assessment
- @ref: 1666
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Haloferax gibbonsii gene for 16S rRNA | D13378 | 1470 | ena | 35746 |
20218 | Haloferax gibbonsii gene for 16S rRNA, complete sequence, strain: JCM 8863 | AB663376 | 1473 | ena | 35746 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Haloferax gibbonsii ATCC 33959 | 2554235501 | draft | img | 1227459 |
67770 | Haloferax gibbonsii ATCC 33959 | GCA_000336775 | contig | ncbi | 1227459 |
66792 | Haloferax gibbonsii ATCC 33959 | 1227459.3 | wgs | patric | 1227459 |
GC content
@ref | GC-content | method |
---|---|---|
1666 | 61.8 | |
67770 | 61.8 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 1666
culture collection no.: DSM 4427, ATCC 33959, NCMB 2188, JCM 8863, CCM 3603, IAM 13646, NBRC 102184, NCIMB 2188, VKM B-1756
straininfo link
- @ref: 75412
- straininfo: 40786
literature
- topic: Genetics
- Pubmed-ID: 9720239
- title: The structure of the exocellular polysaccharide produced by the Archaeon Haloferax gibbonsii (ATCC 33959).
- authors: Paramonov NA, Parolis LA, Parolis H, Boan IF, Anton J, Rodriguez-Valera F
- journal: Carbohydr Res
- DOI: 10.1016/s0008-6215(98)00102-5
- year: 1998
- mesh: Carbohydrate Conformation, Carbohydrate Sequence, Carbohydrates/analysis, Haloferax/*chemistry, Hydrolysis, Methylation, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, Oligosaccharides/*chemistry/isolation & purification, Polysaccharides/*chemistry/isolation & purification
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1666 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4427) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4427 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
75412 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40786.1 | StrainInfo: A central database for resolving microbial strain identifiers |