Strain identifier
BacDive ID: 5916
Type strain: 
Species: Halococcus morrhuae
Strain Designation: L.D. 3.1
Strain history: ATCC 17082 <-- C. B. van Niel LD3.1 <-- B. Elazari-Volcani.
NCBI tax ID(s): 931277 (strain), 2250 (species)
version 8.1 (current version)
General
@ref: 505
BacDive-ID: 5916
DSM-Number: 1307
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halococcus morrhuae L.D. 3.1 is a mesophilic archaeon of the family Halococcaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 931277 | strain |
| 2250 | species |
strain history
| @ref | history |
|---|---|
| 505 | <- CCM <- C.B. van Niel, L.D. 3.1 (Sarcina litoralis) <- B. Elazari-Volcani |
| 67770 | ATCC 17082 <-- C. B. van Niel LD3.1 <-- B. Elazari-Volcani. |
doi: 10.13145/bacdive5916.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halococcaceae
- genus: Halococcus
- species: Halococcus morrhuae
- full scientific name: Halococcus morrhuae (Farlow 1880) Kocur and Hodgkiss 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Sarcina morrhuae
@ref: 505
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halococcaceae
genus: Halococcus
species: Halococcus morrhuae
full scientific name: Halococcus morrhuae (Farlow 1880) Kocur and Hodgkiss 1973
strain designation: L.D. 3.1
type strain: yes
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 505 | https://www.dsmz.de/microorganisms/photos/DSM_1307..tiff | Micrograph of DSM 1307. | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
| 505 | https://www.dsmz.de/microorganisms/photos/DSM_1307.jpg | Micrograph of DSM 1307. Scale bar represents 5 um. | Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH |
Culture and growth conditions
culture medium
- @ref: 505
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 505 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8, MK-8(H2)
Isolation, sampling and environmental information
isolation
| @ref | geographic location | sample type |
|---|---|---|
| 505 | Dead Sea | |
| 67770 | Red Sea |
taxonmaps
- @ref: 69479
- File name: preview.99_187216.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17821;96_68869;97_89516;98_121797;99_187216&stattab=map
- Last taxonomy: Halococcus
- 16S sequence: X00662
- Sequence Identity:
- Total samples: 276
- soil counts: 14
- aquatic counts: 97
- animal counts: 164
- plant counts: 1
Safety information
risk assessment
- @ref: 505
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 505 | Halococcus morrhuae gene for 16S rRNA, complete sequence | D11106 | 1474 | ena | 931277 |
| 67770 | Halococcus morrhua 16S ribosomal RNA | X00662 | 1475 | ena | 2250 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halococcus morrhuae DSM 1307 | 2531839093 | draft | img | 931277 |
| 67770 | Halococcus morrhuae DSM 1307 | GCA_000336695 | contig | ncbi | 931277 |
| 66792 | Halococcus morrhuae DSM 1307 | 931277.6 | wgs | patric | 931277 |
GC content
- @ref: 505
- GC-content: 57.8
External links
@ref: 505
culture collection no.: DSM 1307, ATCC 17082, CCM 537, NCMB 787, JCM 8876, NBRC 14719, VKM B-1772, IFO 14719, IAM 13183, NCIMB 787
straininfo link
- @ref: 75397
- straininfo: 71414
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17329792 | Halococcus qingdaonensis sp. nov., a halophilic archaeon isolated from a crude sea-salt sample. | Wang QF, Li W, Yang H, Liu YL, Cao HH, Dornmayr-Pfaffenhuemer M, Stan-Lotter H, Guo GQ | Int J Syst Evol Microbiol | 10.1099/ijs.0.64673-0 | 2007 | Base Composition, China, DNA, Archaeal/genetics, DNA, Ribosomal/genetics, Halococcus/*classification/genetics/isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, *Sodium Chloride | Genetics |
| Phylogeny | 17911282 | Halococcus thailandensis sp. nov., from fish sauce in Thailand. | Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T | Int J Syst Evol Microbiol | 10.1099/ijs.0.65218-0 | 2007 | Aerobiosis, Base Composition, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fish Products/*microbiology, Food Microbiology, Genes, rRNA, Glycolipids/analysis, Halococcus/chemistry/*classification/genetics/*isolation & purification, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Thailand, Vitamin K 2/analysis | Biotechnology |
| Metabolism | 20437233 | Identification of polyhydroxyalkanoates in Halococcus and other haloarchaeal species. | Legat A, Gruber C, Zangger K, Wanner G, Stan-Lotter H | Appl Microbiol Biotechnol | 10.1007/s00253-010-2611-6 | 2010 | Australia, Geologic Sediments/microbiology, Halobacteriaceae/*chemistry/isolation & purification/metabolism/ultrastructure, Halococcus/*chemistry/isolation & purification/metabolism/ultrastructure, Hydroxybutyrates/*chemistry/metabolism, Magnetic Resonance Spectroscopy, Microscopy, Electron, Transmission, Polyesters/*chemistry/metabolism | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 505 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1307) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1307 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75397 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID71414.1 | StrainInfo: A central database for resolving microbial strain identifiers |