Strain identifier

BacDive ID: 5909

Type strain: No

Species: Halobacterium salinarum

Strain Designation: 63-R2

Strain history: NCIMB 2259 <-- B. J. Tindall <-- DSM 669 <-- D. Keradjopoulos <-- NRC <-- A. G. Lochhead.

NCBI tax ID(s): 2242 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 352

BacDive-ID: 5909

DSM-Number: 669

keywords: genome sequence, Archaea, mesophilic

description: Halobacterium salinarum 63-R2 is a mesophilic archaeon that was isolated from salted buffalo hide.

NCBI tax id

  • NCBI tax id: 2242
  • Matching level: species

strain history

@refhistory
352<- D. Keradjopoulos <- NRC <- A.G. Lochhead, 63-R2
67770NCIMB 2259 <-- B. J. Tindall <-- DSM 669 <-- D. Keradjopoulos <-- NRC <-- A. G. Lochhead.

doi: 10.13145/bacdive5909.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Halobacteriaceae
  • genus: Halobacterium
  • species: Halobacterium salinarum
  • full scientific name: Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Serratia cutirubra
    20215Halobacterium cutirubrum
    20215Halobacterium halobium
    20215Bacterium halobium
    20215Halobacterium salinarium
    20215Halobacterium piscisalsi
    20215Pseudomonas salinaria
    20215Halobacter salinaria
    20215Halobacter cutirubrum

@ref: 352

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halobacteriaceae

genus: Halobacterium

species: Halobacterium salinarum

full scientific name: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004

strain designation: 63-R2

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
352HALOBACTERIA MEDIUM (DSMZ Medium 372)yeshttps://mediadive.dsmz.de/medium/372Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
352HALOBACTERIUM MEDIUM (DSMZ Medium 97)yeshttps://mediadive.dsmz.de/medium/97Name: HALOBACTERIUM MEDIUM (DSMZ Medium 97) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.05 g/l MnSO4 x H2O 0.0002 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
352positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

compound production

  • @ref: 352
  • compound: L alanine dehydrogenase

Isolation, sampling and environmental information

isolation

@refsample type
352salted buffalo hide
67770Salted buffalo hide

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Condition#Saline

Safety information

risk assessment

  • @ref: 352
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halobacterium salinarum DSM 669GCA_014202515contigncbi2242
66792Halobacterium cutirubrum DSM 6692861557587draftimg2242

GC content

  • @ref: 67770
  • GC-content: 67.9
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 352

culture collection no.: DSM 669, ATCC 33170, NRC 34001, JCM 8981, IFO 14715, NBRC 14715, NCIMB 2259, VKM B-1808

straininfo link

  • @ref: 75390
  • straininfo: 40374

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phenotype4019414Evidence for two restriction-modification systems in Halobacterium cutirubrum.Patterson NH, Pauling CJ Bacteriol10.1128/jb.163.2.783-784.19851985*Genes, Bacterial, Halobacterium/*genetics/growth & development, Phenotype, Species SpecificityPhylogeny
6733144Photoreactivation in pigmented and non-pigmented extreme halophiles.Sharma N, Hepburn D, Fitt PSBiochim Biophys Acta10.1016/0304-4165(84)90287-31984DNA Repair, DNA, Bacterial/radiation effects, Dose-Response Relationship, Radiation, Halobacterium/genetics/growth & development/*radiation effects, *Light, Mutation, *Pigmentation, *Ultraviolet Rays
Enzymology8297356Cyclosporin A sensitive peptidyl-prolyl cis-trans isomerase in a halophilic archaeum, Halobacterium cutirubrum.Nagashima K, Mitsuhashi S, Kamino K, Maruyama TBiochem Biophys Res Commun10.1006/bbrc.1994.10681994Amino Acid Isomerases/*drug effects/*isolation & purification, Amino Acid Sequence, Carrier Proteins/*drug effects/*isolation & purification, Cyclosporine/*pharmacology, Dose-Response Relationship, Drug, Halobacterium/*enzymology, Molecular Sequence Data, Molecular Weight, Peptidylprolyl Isomerase, Potassium Chloride/pharmacology, Sequence Analysis, Sequence Homology, Amino Acid, Sodium Chloride/pharmacologyPhylogeny
Enzymology9434176Gene for a cyclophilin-type peptidyl-prolyl cis-trans isomerase from a halophilic archaeum, Halobacterium cutirubrum.Iida T, Furutani M, Iwabuchi T, Maruyama TGene10.1016/s0378-1119(97)00534-91997Amino Acid Sequence, Archaeal Proteins/*genetics/metabolism, Base Sequence, Cloning, Molecular, DNA, Archaeal, Escherichia coli, Genes, Archaeal, Halobacterium/*enzymology/genetics, Humans, Molecular Sequence Data, Peptidylprolyl Isomerase/*genetics/metabolism, Sequence Homology, Amino AcidMetabolism

Reference

@idauthorscataloguedoi/urltitle
352Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 669)https://www.dsmz.de/collection/catalogue/details/culture/DSM-669
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75390Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40374.1StrainInfo: A central database for resolving microbial strain identifiers