Strain identifier
BacDive ID: 5908
Type strain: 
Species: Halobacterium salinarum
Strain Designation: 1
Strain history: <- D. Keradjopoulos <- ATCC <- J. Stevenson <- H. Larsen, 1
NCBI tax ID(s): 2242 (species)
version 8.1 (current version)
General
@ref: 351
BacDive-ID: 5908
DSM-Number: 668
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Halobacterium salinarum 1 is a mesophilic archaeon that was isolated from salted fish.
NCBI tax id
- NCBI tax id: 2242
- Matching level: species
strain history
- @ref: 351
- history: <- D. Keradjopoulos <- ATCC <- J. Stevenson <- H. Larsen, 1
doi: 10.13145/bacdive5908.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Halobacteriaceae
- genus: Halobacterium
- species: Halobacterium salinarum
- full scientific name: Halobacterium salinarum corrig. (Harrison and Kennedy 1922) Elazari-Volcani 1957 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serratia cutirubra 20215 Halobacterium cutirubrum 20215 Halobacterium halobium 20215 Bacterium halobium 20215 Halobacterium salinarium 20215 Halobacterium piscisalsi 20215 Pseudomonas salinaria 20215 Halobacter salinaria 20215 Halobacter cutirubrum
@ref: 351
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Halobacteriaceae
genus: Halobacterium
species: Halobacterium salinarum
full scientific name: Halobacterium salinarum (Harrison and Kennedy 1922) Elazari-Volcani 1957 emend. Gruber et al. 2004
strain designation: 1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 351 | HALOBACTERIA MEDIUM (DSMZ Medium 372) | yes | https://mediadive.dsmz.de/medium/372 | Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water |
| 351 | HALOBACTERIUM MEDIUM (DSMZ Medium 97) | yes | https://mediadive.dsmz.de/medium/97 | Name: HALOBACTERIUM MEDIUM (DSMZ Medium 97) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.05 g/l MnSO4 x H2O 0.0002 g/l Distilled water |
culture temp
- @ref: 351
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 351
- compound: L alanine dehydrogenase
Isolation, sampling and environmental information
isolation
- @ref: 351
- sample type: salted fish
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Fishes |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 351
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: H.salinarium 16S rRNA gene
- accession: X92978
- length: 868
- database: ena
- NCBI tax ID: 2242
Genome sequences
- @ref: 66792
- description: Halobacterium salinarum DSM 668
- accession: 2596583670
- assembly level: draft
- database: img
- NCBI tax ID: 2242
GC content
- @ref: 351
- GC-content: 67.0
External links
@ref: 351
culture collection no.: DSM 668, ATCC 19700
straininfo link
- @ref: 75389
- straininfo: 37077
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 351 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 668) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-668 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 75389 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37077.1 | StrainInfo: A central database for resolving microbial strain identifiers |