Strain identifier
BacDive ID: 5907
Type strain: 
Species: Haloarcula quadrata
Strain Designation: 801030/1
Strain history: DSM 11927 <-- A. Oren <-- M. Kessel 801030/1.
NCBI tax ID(s): 182779 (species)
version 9.2 (current version)
General
@ref: 4542
BacDive-ID: 5907
DSM-Number: 11927
keywords: genome sequence, 16S sequence, Archaea, mesophilic
description: Haloarcula quadrata 801030/1 is a mesophilic archaeon that was isolated from brine pool.
NCBI tax id
- NCBI tax id: 182779
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4542 | <- A. Oren, Hebrew Univ. of Jerusalem <- M.Kessel, Hebrew Univ. of Jerusalem, 801030/1 |
| 67770 | DSM 11927 <-- A. Oren <-- M. Kessel 801030/1. |
doi: 10.13145/bacdive5907.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Haloarculaceae
- genus: Haloarcula
- species: Haloarcula quadrata
- full scientific name: Haloarcula quadrata Oren et al. 1999
@ref: 4542
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Haloarculaceae
genus: Haloarcula
species: Haloarcula quadrata
full scientific name: Haloarcula quadrata Oren et al. 1999
strain designation: 801030/1
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4542 | HALOBACTERIUM MEDIUM (DSMZ Medium 97) | yes | https://mediadive.dsmz.de/medium/97 | Name: HALOBACTERIUM MEDIUM (DSMZ Medium 97) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.05 g/l MnSO4 x H2O 0.0002 g/l Distilled water |
| 4542 | HALOBACTERIA MEDIUM (DSMZ Medium 372) | yes | https://mediadive.dsmz.de/medium/372 | Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 4542 | positive | growth | 35 |
| 67770 | positive | growth | 37 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4542 | brine pool | Sinai, sabkha Gavish | Egypt | EGY | Africa |
| 67770 | Brine water from Sebkha Gavish | Southern Sinai | Egypt | EGY | Africa |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Aquatic |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 4542
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Haloarcula sp. gene for 16S rRNA | AB010964 | 1471 | nuccore | 182779 |
| 20218 | Haloarcula sp. gene for 16S rRNA | AB010965 | 1470 | nuccore | 182779 |
| 20218 | Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048 | AB355988 | 1472 | nuccore | 182779 |
| 20218 | Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048 | AB605777 | 1472 | nuccore | 182779 |
| 20218 | Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnA) gene, complete sequence | EF645689 | 1472 | nuccore | 182779 |
| 20218 | Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnB) gene, complete sequence | EF645694 | 1472 | nuccore | 182779 |
| 124043 | Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048. | LC198787 | 1405 | nuccore | 182779 |
| 124043 | Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048. | LC198788 | 1405 | nuccore | 182779 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Haloarcula quadrata DSM 11927 | 2778260947 | draft | img | 182779 |
| 67770 | Haloarcula quadrata DSM 11927 | GCA_003634715 | contig | ncbi | 182779 |
| 66792 | Haloarcula quadrata strain DSM 11927 | 182779.7 | wgs | patric | 182779 |
GC content
- @ref: 67770
- GC-content: 60.1
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 4542
culture collection no.: DSM 11927, JCM 11048, ATCC 700850, CGMCC 1.4298, CGMCC 1.6164
straininfo link
- @ref: 75388
- straininfo: 44175
literature
- topic: Phylogeny
- Pubmed-ID: 10425773
- title: Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt).
- authors: Oren A, Ventosa A, Gutierrez MC, Kamekura M
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-3-1149
- year: 1999
- mesh: Base Composition, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Egypt, Genes, rRNA, Haloarcula/*classification/cytology/genetics/isolation & purification/physiology, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolism
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4542 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11927) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11927 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 75388 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44175.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |