Strain identifier

BacDive ID: 5907

Type strain: Yes

Species: Haloarcula quadrata

Strain Designation: 801030/1

Strain history: DSM 11927 <-- A. Oren <-- M. Kessel 801030/1.

NCBI tax ID(s): 182779 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4542

BacDive-ID: 5907

DSM-Number: 11927

keywords: genome sequence, 16S sequence, Archaea, mesophilic

description: Haloarcula quadrata 801030/1 is a mesophilic archaeon that was isolated from brine pool.

NCBI tax id

  • NCBI tax id: 182779
  • Matching level: species

strain history

@refhistory
4542<- A. Oren, Hebrew Univ. of Jerusalem <- M.Kessel, Hebrew Univ. of Jerusalem, 801030/1
67770DSM 11927 <-- A. Oren <-- M. Kessel 801030/1.

doi: 10.13145/bacdive5907.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Haloarculaceae
  • genus: Haloarcula
  • species: Haloarcula quadrata
  • full scientific name: Haloarcula quadrata Oren et al. 1999

@ref: 4542

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloarculaceae

genus: Haloarcula

species: Haloarcula quadrata

full scientific name: Haloarcula quadrata Oren et al. 1999

strain designation: 801030/1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4542HALOBACTERIUM MEDIUM (DSMZ Medium 97)yeshttps://mediadive.dsmz.de/medium/97Name: HALOBACTERIUM MEDIUM (DSMZ Medium 97) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.05 g/l MnSO4 x H2O 0.0002 g/l Distilled water
4542HALOBACTERIA MEDIUM (DSMZ Medium 372)yeshttps://mediadive.dsmz.de/medium/372Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
4542positivegrowth35mesophilic
67770positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
4542brine poolSinai, sabkha GavishEgyptEGYAfrica
67770Brine water from Sebkha GavishSouthern SinaiEgyptEGYAfrica

isolation source categories

Cat1Cat2
#Environmental#Aquatic
#Condition#Saline

Safety information

risk assessment

  • @ref: 4542
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Haloarcula sp. gene for 16S rRNAAB0109641471ena182779
20218Haloarcula sp. gene for 16S rRNAAB0109651470ena182779
20218Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048AB3559881472ena182779
20218Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048AB6057771472ena182779
20218Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnA) gene, complete sequenceEF6456891472ena182779
20218Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnB) gene, complete sequenceEF6456941472ena182779

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloarcula quadrata DSM 119272778260947draftimg182779
67770Haloarcula quadrata DSM 11927GCA_003634715contigncbi182779
66792Haloarcula quadrata strain DSM 11927182779.7wgspatric182779

GC content

  • @ref: 67770
  • GC-content: 60.1
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 4542

culture collection no.: DSM 11927, JCM 11048, ATCC 700850, CGMCC 1.4298, CGMCC 1.6164

straininfo link

  • @ref: 75388
  • straininfo: 44175

literature

  • topic: Phylogeny
  • Pubmed-ID: 10425773
  • title: Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt).
  • authors: Oren A, Ventosa A, Gutierrez MC, Kamekura M
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-3-1149
  • year: 1999
  • mesh: Base Composition, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Egypt, Genes, rRNA, Haloarcula/*classification/cytology/genetics/isolation & purification/physiology, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sodium Chloride/metabolism
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4542Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11927)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11927
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75388Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID44175.1StrainInfo: A central database for resolving microbial strain identifiers