Strain identifier

BacDive ID: 5904

Type strain: Yes

Species: Haloarcula marismortui

Strain Designation: Halobacterium of the Dead Sea, Halobacterium of the Dead Sea

Strain history: ATCC 43049 <-- L. Hochstein <-- B. J. Tindall <-- M. Ginzburg.

NCBI tax ID(s): 272569 (strain), 2238 (species)

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General

@ref: 1463

BacDive-ID: 5904

DSM-Number: 3752

keywords: genome sequence, 16S sequence, Archaea, mesophilic, Gram-negative

description: Haloarcula marismortui Halobacterium of the Dead Sea is a mesophilic, Gram-negative archaeon of the family Haloarculaceae.

NCBI tax id

NCBI tax idMatching level
272569strain
2238species

strain history

@refhistory
1463<- B.J. Tindall <- M. Ginzburg ("Halobacterium marismortui", "Halobacterium of the Dead Sea")
67770ATCC 43049 <-- L. Hochstein <-- B. J. Tindall <-- M. Ginzburg.

doi: 10.13145/bacdive5904.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Halobacteriales
  • family: Haloarculaceae
  • genus: Haloarcula
  • species: Haloarcula marismortui
  • full scientific name: Haloarcula marismortui (ex Volcani 1940) Oren et al. 1990

@ref: 1463

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Haloarculaceae

genus: Haloarcula

species: Haloarcula marismortui

full scientific name: Haloarcula marismortui (ex Volcani 1940) Oren et al. 1990

strain designation: Halobacterium of the Dead Sea, Halobacterium of the Dead Sea

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.957

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1463HALOBACTERIA MEDIUM (DSMZ Medium 372)yeshttps://mediadive.dsmz.de/medium/372Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
1463HALOBACTERIUM MEDIUM (DSMZ Medium 97)yeshttps://mediadive.dsmz.de/medium/97Name: HALOBACTERIUM MEDIUM (DSMZ Medium 97) Composition: NaCl 250.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.05 g/l MnSO4 x H2O 0.0002 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
1463positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.817

Isolation, sampling and environmental information

isolation

@refgeographic locationsample type
1463Dead Sea
67770Water from the Dead Sea

Safety information

risk assessment

  • @ref: 1463
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218H. marismortui rrnA gene for HC8 16S rRNAX616881472ena2238
20218Haloarcula marismortui rrnB gene for 16S rRNA HH10X616891472ena2238
20218Haloarcula marismortui strain CGMCC1.1784 16S ribosomal RNA (rrnA) gene, complete sequenceEF6456921472ena2238
20218Haloarcula marismortui gene for 16S ribosomal RNA, partial sequence, strain: JCM 8966AB3559871472ena2238
20218Haloarcula marismortui gene for 16S rRNA, complete sequence, strain: JCM 8966AB6633541472ena2238
1463Haloarcula marismortui strain CGMCC1.1784 16S ribosomal RNA (rrnB) gene, complete sequenceEF6456931472ena2238

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Haloarcula marismortui ATCC 43049GCA_000011085completencbi272569
66792Haloarcula marismortui ATCC 43049GCA_005310945completencbi272569
66792Haloarcula marismortui ATCC 430492914888634completeimg272569
66792Haloarcula marismortui ATCC 43049638154503completeimg272569
66792Haloarcula marismortui ATCC 43049272569.17completepatric272569
66792Haloarcula marismortui ATCC 43049272569.32plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.35plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.34plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.33plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.31plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.36plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.37plasmidpatric272569
66792Haloarcula marismortui ATCC 43049272569.39completepatric272569

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno74.534no
flagellatedno94.433no
gram-positiveno97.958no
anaerobicno95.512no
halophileyes91.364no
spore-formingno94.773no
glucose-utilyes90.333no
aerobicyes85.606no
thermophileno74.771no
glucose-fermentno82.664no

External links

@ref: 1463

culture collection no.: DSM 3752, ATCC 43049, JCM 8966, NCIMB 13162, VKM B-1809

straininfo link

  • @ref: 75384
  • straininfo: 41617

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11536469Haloarcula marismortui (Volcani) sp. nov., nom. rev., an extremely halophilic bacterium from the Dead Sea.Oren A, Ginzburg M, Ginzburg BZ, Hochstein LI, Volcani BEInt J Syst Bacteriol10.1099/00207713-40-2-2091990Archaea/*classification/*isolation & purification/physiology, Halobacterium/*classification/*isolation & purification/physiology, Marine Biology, Oceans and Seas, Terminology as TopicEnzymology
23100763An evidence of laccases in archaea.Sharma KK, Kuhad RCIndian J Microbiol10.1007/s12088-009-0039-42009
Phylogeny23563231Halomicroarcula pellucida gen. nov., sp. nov., a non-pigmented, transparent-colony-forming, halophilic archaeon isolated from solar salt.Echigo A, Minegishi H, Shimane Y, Kamekura M, Itoh T, Usami RInt J Syst Evol Microbiol10.1099/ijs.0.049965-02013Base Composition, DNA, Archaeal/genetics, DNA-Directed RNA Polymerases/genetics, France, Genes, Archaeal, Halobacteriaceae/*classification/genetics/isolation & purification, Lipids/analysis, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Sodium ChlorideGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1463Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3752)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3752
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75384Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41617.1StrainInfo: A central database for resolving microbial strain identifiers