Strain identifier
BacDive ID: 5872
Type strain: 
Species: Halobiforma haloterrestris
Strain Designation: 135, 147-98
Strain history: DSM 13078 <-- B. H. A. Rehm 135.
NCBI tax ID(s): 148448 (species)
version 9.3 (current version)
General
@ref: 4900
BacDive-ID: 5872
DSM-Number: 13078
keywords: genome sequence, 16S sequence, Archaea, thermophilic
description: Halobiforma haloterrestris 135 is a thermophilic archaeon that was isolated from hypersaline soil.
NCBI tax id
- NCBI tax id: 148448
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4900 | <- B. Rehm <- F. F. Hezayen, Univ. Münster, Germany; 135 |
| 67770 | DSM 13078 <-- B. H. A. Rehm 135. |
doi: 10.13145/bacdive5872.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Halobacteria
- order: Halobacteriales
- family: Natrialbaceae
- genus: Halobiforma
- species: Halobiforma haloterrestris
- full scientific name: Halobiforma haloterrestris Hezayen et al. 2002
synonyms
- @ref: 20215
- synonym: Natronobacterium haloterrestre
@ref: 4900
domain: Archaea
phylum: Euryarchaeota
class: Halobacteria
order: Halobacteriales
family: Natrialbaceae
genus: Halobiforma
species: Halobiforma haloterrestris
full scientific name: Halobiforma haloterrestris Hezayen et al. 2002
strain designation: 135, 147-98
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: negative
- confidence: 93.9
Culture and growth conditions
culture medium
- @ref: 4900
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 4900 | positive | growth | 42 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: aerobe
- confidence: 91.9
spore formation
- @ref: 125439
- spore formation: no
- confidence: 93.9
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4900 | hypersaline soil | 100Km to the north of Aswan | Egypt | EGY | Africa |
| 67770 | Hypersaline soil close to Aswan | Egypt | EGY | Africa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_187228.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17652;96_68878;97_89526;98_121807;99_187228&stattab=map
- Last taxonomy: Halobiforma
- 16S sequence: AF333760
- Sequence Identity:
- Total samples: 6
- soil counts: 1
- aquatic counts: 5
Safety information
risk assessment
- @ref: 4900
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 4900 | Halobacteriaceae gen. sp. 135 16S ribosomal RNA gene, partial sequence | AF333760 | 1457 | nuccore | 148448 |
| 124043 | Halobiforma haloterrestris gene for 16S rRNA, complete sequence, strain: JCM 11627. | AB663434 | 1471 | nuccore | 148448 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Halobiforma haloterrestris DSM 13078 | 2693429869 | draft | img | 148448 |
| 67770 | Halobiforma haloterrestris DSM 13078 | GCA_900112205 | scaffold | ncbi | 148448 |
| 66792 | Halobiforma haloterrestris strain DSM 13078 | 148448.7 | wgs | patric | 148448 |
GC content
- @ref: 67770
- GC-content: 66.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence |
|---|---|---|---|---|---|
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 93.9 |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 53.9 |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 93.9 |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 91.9 |
External links
@ref: 4900
culture collection no.: DSM 13078, JCM 11627, CGMCC 1.3780, CGMCC 1.6136
straininfo link
- @ref: 75352
- straininfo: 100670
literature
- topic: Phylogeny
- Pubmed-ID: 12508897
- title: Characterization of a novel halophilic archaeon, Halobiforma haloterrestris gen. nov., sp. nov., and transfer of Natronobacterium nitratireducens to Halobiforma nitratireducens comb. nov.
- authors: Hezayen FF, Tindall BJ, Steinbuchel A, Rehm BHA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/00207713-52-6-2271
- year: 2002
- mesh: Base Composition, Base Sequence, DNA, Archaeal/chemistry/genetics, DNA, Ribosomal/genetics, Evolution, Molecular, Halobacteriaceae/*classification/genetics/isolation & purification/metabolism, Lipids/analysis, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Archaeal/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Species Specificity, Terminology as Topic
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4900 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13078) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13078 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75352 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100670.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |