Strain identifier

BacDive ID: 5870

Type strain: Yes

Species: Haliangium tepidum

Strain Designation: SMP-10

Strain history: R. Fudou SMP-10.

NCBI tax ID(s): 162028 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5352

BacDive-ID: 5870

DSM-Number: 14436

keywords: 16S sequence, Bacteria, mesophilic

description: Haliangium tepidum SMP-10 is a mesophilic bacterium that was isolated from coastal sands.

NCBI tax id

  • NCBI tax id: 162028
  • Matching level: species

strain history

@refhistory
5352<- R. Fudou; SMP-10 <- T. Iizuka
67770R. Fudou SMP-10.

doi: 10.13145/bacdive5870.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Kofleriaceae
  • genus: Haliangium
  • species: Haliangium tepidum
  • full scientific name: Haliangium tepidum Fudou et al. 2002

@ref: 5352

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Kofleriaceae

genus: Haliangium

species: Haliangium tepidum

full scientific name: Haliangium tepidum Fudou et al. 2002

strain designation: SMP-10

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5352
  • name: VY/4-SWS AGAR (DSMZ Medium 958)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/958
  • composition: Name: VY/4-SWS AGAR (DSMZ Medium 958) Composition: NaCl 20.0 g/l Agar 15.0 g/l MgSO4 x 7 H2O 8.0 g/l Yeast cell paste 2.5 g/l CaCl2 x 2 H2O 1.0 g/l KCl 0.5 g/l NaHCO3 0.16 g/l KBr 0.08 g/l SrCl2 x 6 H2O 0.03 g/l Sodium beta-glycerophosphate 0.01 g/l Ferric citrate 0.01 g/l Cyanocobalamine 0.0005 g/l EDTA 0.0005 g/l FeSO4 x 7 H2O 0.0002 g/l H3BO3 3e-05 g/l CoCl2 x 6 H2O 2e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l Na2MoO4 x 2 H2O 3e-06 g/l MnCl2 x 4 H2O 3e-06 g/l NiCl2 x 6 H2O 2e-06 g/l CuCl2 x 2 H2O 1e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5352positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-8

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5352coastal sandsKanagawaJapanJPNAsia
67770Sea grass sample collected from a sandy beach on the Miura PeninsulaKanagawaJapanJPNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Sandy

Safety information

risk assessment

  • @ref: 5352
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5352
  • description: Haliangium tepidum gene for 16S rRNA
  • accession: AB062751
  • length: 1508
  • database: ena
  • NCBI tax ID: 162028

GC content

@refGC-contentmethod
535269
6777069high performance liquid chromatography (HPLC)

External links

@ref: 5352

culture collection no.: DSM 14436, JCM 11304, AJ 13914, CIP 107737

straininfo link

  • @ref: 75350
  • straininfo: 100668

literature

  • topic: Phylogeny
  • Pubmed-ID: 12469307
  • title: Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: novel moderately halophilic myxobacteria isolated from coastal saline environments.
  • authors: Fudou R, Jojima Y, Iizuka T, Yamanaka S
  • journal: J Gen Appl Microbiol
  • DOI: 10.2323/jgam.48.109
  • year: 2002
  • mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Myxococcales/*classification/genetics/isolation & purification/metabolism, *Phylogeny, Polymerase Chain Reaction, Quinones/metabolism, RNA, Ribosomal, 16S/chemistry/genetics, Sodium Chloride/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
5352Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14436)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14436
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75350Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100668.1StrainInfo: A central database for resolving microbial strain identifiers