Strain identifier
BacDive ID: 5870
Type strain:
Species: Haliangium tepidum
Strain Designation: SMP-10
Strain history: R. Fudou SMP-10.
NCBI tax ID(s): 162028 (species)
version 8.1 (current version)
General
@ref: 5352
BacDive-ID: 5870
DSM-Number: 14436
keywords: 16S sequence, Bacteria, mesophilic
description: Haliangium tepidum SMP-10 is a mesophilic bacterium that was isolated from coastal sands.
NCBI tax id
- NCBI tax id: 162028
- Matching level: species
strain history
@ref | history |
---|---|
5352 | <- R. Fudou; SMP-10 <- T. Iizuka |
67770 | R. Fudou SMP-10. |
doi: 10.13145/bacdive5870.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Myxococcales
- family: Kofleriaceae
- genus: Haliangium
- species: Haliangium tepidum
- full scientific name: Haliangium tepidum Fudou et al. 2002
@ref: 5352
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Myxococcales
family: Kofleriaceae
genus: Haliangium
species: Haliangium tepidum
full scientific name: Haliangium tepidum Fudou et al. 2002
strain designation: SMP-10
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5352
- name: VY/4-SWS AGAR (DSMZ Medium 958)
- growth: yes
- link: https://mediadive.dsmz.de/medium/958
- composition: Name: VY/4-SWS AGAR (DSMZ Medium 958) Composition: NaCl 20.0 g/l Agar 15.0 g/l MgSO4 x 7 H2O 8.0 g/l Yeast cell paste 2.5 g/l CaCl2 x 2 H2O 1.0 g/l KCl 0.5 g/l NaHCO3 0.16 g/l KBr 0.08 g/l SrCl2 x 6 H2O 0.03 g/l Sodium beta-glycerophosphate 0.01 g/l Ferric citrate 0.01 g/l Cyanocobalamine 0.0005 g/l EDTA 0.0005 g/l FeSO4 x 7 H2O 0.0002 g/l H3BO3 3e-05 g/l CoCl2 x 6 H2O 2e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l Na2MoO4 x 2 H2O 3e-06 g/l MnCl2 x 4 H2O 3e-06 g/l NiCl2 x 6 H2O 2e-06 g/l CuCl2 x 2 H2O 1e-06 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5352 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
5352 | coastal sands | Kanagawa | Japan | JPN | Asia |
67770 | Sea grass sample collected from a sandy beach on the Miura Peninsula | Kanagawa | Japan | JPN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Sandy
Safety information
risk assessment
- @ref: 5352
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5352
- description: Haliangium tepidum gene for 16S rRNA
- accession: AB062751
- length: 1508
- database: ena
- NCBI tax ID: 162028
GC content
@ref | GC-content | method |
---|---|---|
5352 | 69 | |
67770 | 69 | high performance liquid chromatography (HPLC) |
External links
@ref: 5352
culture collection no.: DSM 14436, JCM 11304, AJ 13914, CIP 107737
straininfo link
- @ref: 75350
- straininfo: 100668
literature
- topic: Phylogeny
- Pubmed-ID: 12469307
- title: Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: novel moderately halophilic myxobacteria isolated from coastal saline environments.
- authors: Fudou R, Jojima Y, Iizuka T, Yamanaka S
- journal: J Gen Appl Microbiol
- DOI: 10.2323/jgam.48.109
- year: 2002
- mesh: Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, Geologic Sediments/*microbiology, Molecular Sequence Data, Myxococcales/*classification/genetics/isolation & purification/metabolism, *Phylogeny, Polymerase Chain Reaction, Quinones/metabolism, RNA, Ribosomal, 16S/chemistry/genetics, Sodium Chloride/*metabolism
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
5352 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14436) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14436 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
75350 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID100668.1 | StrainInfo: A central database for resolving microbial strain identifiers |