Strain identifier

BacDive ID: 5854

Type strain: No

Species: Zooshikella ganghwensis

Strain Designation: JC2045

Strain history: <- J. Chun; JC2045

NCBI tax ID(s): 202772 (species)

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General

@ref: 5785

BacDive-ID: 5854

DSM-Number: 15268

keywords: 16S sequence, Bacteria, mesophilic

description: Zooshikella ganghwensis JC2045 is a mesophilic bacterium that was isolated from sediment sample of getbol.

NCBI tax id

  • NCBI tax id: 202772
  • Matching level: species

strain history

  • @ref: 5785
  • history: <- J. Chun; JC2045

doi: 10.13145/bacdive5854.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Zooshikellaceae
  • genus: Zooshikella
  • species: Zooshikella ganghwensis
  • full scientific name: Zooshikella ganghwensis Yi et al. 2003

  • synonyms

    @refsynonym
    20215Zooshikella ganghwensis subsp. marina
    20215Zooshikella marina

@ref: 5785

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Hahellaceae

genus: Zooshikella

species: Zooshikella ganghwensis

full scientific name: Zooshikella ganghwensis Yi et al. 2003

strain designation: JC2045

type strain: no

Culture and growth conditions

culture medium

  • @ref: 5785
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 5785
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5785
  • sample type: sediment sample of getbol
  • geographic location: Korea, Ganghwa island
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_6836.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_202;96_3219;97_3951;98_5036;99_6836&stattab=map
  • Last taxonomy: Zooshikella
  • 16S sequence: AY130995
  • Sequence Identity:
  • Total samples: 1619
  • soil counts: 143
  • aquatic counts: 1307
  • animal counts: 154
  • plant counts: 15

Safety information

risk assessment

  • @ref: 5785
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5785
  • description: Zooshikella ganghwensis strain JC2045 16S ribosomal RNA gene, partial sequence
  • accession: AY130995
  • length: 1443
  • database: ena
  • NCBI tax ID: 202772

External links

@ref: 5785

culture collection no.: DSM 15268, KCTC 12045

straininfo link

  • @ref: 75335
  • straininfo: 113587

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5785Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15268)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15268
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75335Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID113587.1StrainInfo: A central database for resolving microbial strain identifiers