Strain identifier
BacDive ID: 5819
Type strain: 
Species: Geodermatophilus sp.
Strain history: <- C. Urzi, Univ. Messina; BC503
NCBI tax ID(s): 1550242 (species)
version 8.1 (current version)
General
@ref: 11835
BacDive-ID: 5819
DSM-Number: 44511
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Geodermatophilus sp. CCUG 62968 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from carrara Marble Ca11.
NCBI tax id
- NCBI tax id: 1550242
- Matching level: species
strain history
- @ref: 11835
- history: <- C. Urzi, Univ. Messina; BC503
doi: 10.13145/bacdive5819.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Geodermatophilus
- species: Geodermatophilus sp.
- full scientific name: Geodermatophilus Luedemann 1968 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pleomorpha 20215 Petropleomorpha
@ref: 11835
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Geodermatophilus
species: Geodermatophilus sp.
full scientific name: Geodermatophilus sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 62917
- incubation period: 3 days
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 66793 | EM_DSM_44511_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44511_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44511_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44511_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
| 66793 | EM_DSM_44511_5.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 11835
- name: LUEDEMANN MEDIUM (LUEDEMANN; 1968) (DSMZ Medium 877)
- growth: yes
- link: https://mediadive.dsmz.de/medium/877
- composition: Name: LUEDEMANN MEDIUM (LUEDEMANN; 1968) (DSMZ Medium 877) Composition: Malt extract broth 15.0 g/l Agar 15.0 g/l Glucose 10.0 g/l Starch 10.0 g/l NaCl 5.0 g/l Yeast extract 5.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11835 | positive | growth | 28 | mesophilic |
| 62917 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 62917
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 91.342
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|
| 11835 | carrara Marble Ca11 | Italy | ITA | Europe | |
| 62917 | Marble,Carrara | Italy | ITA | Europe | 2000 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Geologic
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Geodermatophilus sp. DSM 44511 | 1550242.3 | wgs | patric | 1550242 |
| 66792 | Geodermatophilus carrarae DSM 44511 | 2599185187 | draft | img | 1550242 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 69 | no |
| motile | yes | 74.284 | no |
| gram-positive | yes | 92.822 | no |
| anaerobic | no | 99.242 | yes |
| aerobic | yes | 94.276 | yes |
| halophile | no | 88.972 | no |
| spore-forming | no | 64.907 | no |
| thermophile | no | 99.197 | no |
| glucose-util | yes | 90.001 | no |
| flagellated | no | 91.478 | no |
| glucose-ferment | no | 89.033 | no |
External links
@ref: 11835
culture collection no.: CCUG 62968, DSM 44511, MTCC 11560, BC 503
straininfo link
- @ref: 75301
- straininfo: 402435
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11835 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44511) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44511 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 62917 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 62968) | https://www.ccug.se/strain?id=62968 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 75301 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402435.1 | StrainInfo: A central database for resolving microbial strain identifiers |