Strain identifier
BacDive ID: 5807
Type strain: 
Species: Geotalea daltonii
Strain Designation: FRC-32
Strain history: J. E. Kostka FRC-32.
NCBI tax ID(s): 1203471 (species)
version 9.2 (current version)
General
@ref: 16230
BacDive-ID: 5807
DSM-Number: 22248
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped
description: Geotalea daltonii FRC-32 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from subsurface sediments contaminated with high levels of uranium and aromatic hydrocarbons.
NCBI tax id
- NCBI tax id: 1203471
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16230 | <- J. E. Kostka, Florida State Univ., Oceanography Dept., Tallahassee, USA; FRC-32 <- D. D. Dalton; {2002} |
| 67770 | J. E. Kostka FRC-32. |
doi: 10.13145/bacdive5807.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Deltaproteobacteria
- order: Desulfuromonadales
- family: Geobacteraceae
- genus: Geotalea
- species: Geotalea daltonii
- full scientific name: Geotalea daltonii (Prakash et al. 2010) Waite et al. 2020
synonyms
- @ref: 20215
- synonym: Geobacter daltonii
@ref: 16230
domain: Bacteria
phylum: Proteobacteria
class: Deltaproteobacteria
order: Desulfuromonadales
family: Geobacteraceae
genus: Geotalea
species: Geotalea daltonii
full scientific name: Geotalea daltonii (Prakash et al. 2010) Waite et al. 2020
strain designation: FRC-32
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | confidence |
|---|---|---|---|---|---|
| 29320 | negative | 1.25 µm | 0.4 µm | rod-shaped | |
| 69480 | negative | 92.475 |
colony morphology
- @ref: 16230
- incubation period: 3-7 days
pigmentation
- @ref: 29320
- production: yes
Culture and growth conditions
culture medium
- @ref: 16230
- name: GEOANAEROBACTER MEDIUM (DSMZ Medium 838)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium838.pdf
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 16230 | positive | growth | 30 |
| 29320 | positive | growth | 20-35 |
| 29320 | positive | optimum | 30 |
| 67770 | positive | growth | 30 |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 29320 | positive | growth | 06-08 |
| 29320 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 16230 | anaerobe |
| 29320 | anaerobe |
spore formation
- @ref: 29320
- spore formation: no
halophily
- @ref: 29320
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <0.7 %
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16230 | subsurface sediments contaminated with high levels of uranium(VI) and aromatic hydrocarbons | Tennessee, Oak Ridge, Oak Ridge Field Research Center | USA | USA | North America |
| 67770 | Contaminated subsurface of Oak Ridge Field Research Center | US Department of Energy, Oak Ridge, TN | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_7373.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15357;96_514;97_592;98_680;99_7373&stattab=map
- Last taxonomy: Geobacter
- 16S sequence: EU660516
- Sequence Identity:
- Total samples: 1260
- soil counts: 714
- aquatic counts: 505
- animal counts: 11
- plant counts: 30
Safety information
risk assessment
- @ref: 16230
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16230
- description: Geobacter daltonii FRC-32 16S ribosomal RNA gene, partial sequence
- accession: EU660516
- length: 1424
- database: nuccore
- NCBI tax ID: 316067
Genome sequences
- @ref: 66792
- description: Geotalea daltonii FRC-32
- accession: GCA_000022265
- assembly level: complete
- database: ncbi
- NCBI tax ID: 316067
GC content
| @ref | GC-content | method |
|---|---|---|
| 16230 | 53 | sequence analysis |
| 29320 | 53 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 92.475 | yes |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 71.401 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 82.569 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 84.019 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 85.616 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 68.907 | no |
External links
@ref: 16230
culture collection no.: DSM 22248, JCM 15807
straininfo link
- @ref: 75286
- straininfo: 403938
literature
- topic: Phylogeny
- Pubmed-ID: 19654355
- title: Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination.
- authors: Prakash O, Gihring TM, Dalton DD, Chin KJ, Green SJ, Akob DM, Wanger G, Kostka JE
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.010843-0
- year: 2009
- mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Ferric Compounds/*metabolism, Geobacter/*classification/genetics/*isolation & purification/metabolism, Hydrocarbons/*metabolism, Metals, Heavy/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Uranium/*metabolism, Water Pollutants, Chemical/*metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16230 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22248) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22248 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29320 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25732 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 75286 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403938.1 | StrainInfo: A central database for resolving microbial strain identifiers |