Strain identifier

BacDive ID: 5807

Type strain: Yes

Species: Geotalea daltonii

Strain Designation: FRC-32

Strain history: J. E. Kostka FRC-32.

NCBI tax ID(s): 1203471 (species)

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General

@ref: 16230

BacDive-ID: 5807

DSM-Number: 22248

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Geotalea daltonii FRC-32 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from subsurface sediments contaminated with high levels of uranium and aromatic hydrocarbons.

NCBI tax id

  • NCBI tax id: 1203471
  • Matching level: species

strain history

@refhistory
16230<- J. E. Kostka, Oceanography Dept., Florida State Univ., Tallahassee, USA; FRC-32 <- D. D. Dalton {2002}
67770J. E. Kostka FRC-32.

doi: 10.13145/bacdive5807.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Geobacteraceae
  • genus: Geotalea
  • species: Geotalea daltonii
  • full scientific name: Geotalea daltonii (Prakash et al. 2010) Waite et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Geobacter daltonii

@ref: 16230

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Geobacteraceae

genus: Geotalea

species: Geotalea daltonii

full scientific name: Geotalea daltonii (Prakash et al. 2010) Waite et al. 2020

strain designation: FRC-32

type strain: yes

Morphology

cell morphology

  • @ref: 29320
  • gram stain: negative
  • cell length: 1.25 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped

colony morphology

  • @ref: 16230
  • incubation period: 3-7 days

pigmentation

  • @ref: 29320
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16230
  • name: GEOANAEROBACTER MEDIUM (DSMZ Medium 838)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium838.pdf

culture temp

@refgrowthtypetemperaturerange
16230positivegrowth30mesophilic
29320positivegrowth20-35
29320positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
29320positivegrowth06-08
29320positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16230anaerobe
29320anaerobe

spore formation

  • @ref: 29320
  • spore formation: no

halophily

  • @ref: 29320
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <0.7 %

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16230subsurface sediments contaminated with high levels of uranium(VI) and aromatic hydrocarbonsTennessee, Oak Ridge, Oak Ridge Field Research CenterUSAUSANorth America
67770Contaminated subsurface of Oak Ridge Field Research CenterUS Department of Energy, Oak Ridge, TNUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_7373.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15357;96_514;97_592;98_680;99_7373&stattab=map
  • Last taxonomy: Geobacter
  • 16S sequence: EU660516
  • Sequence Identity:
  • Total samples: 1260
  • soil counts: 714
  • aquatic counts: 505
  • animal counts: 11
  • plant counts: 30

Safety information

risk assessment

  • @ref: 16230
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16230
  • description: Geobacter daltonii FRC-32 16S ribosomal RNA gene, partial sequence
  • accession: EU660516
  • length: 1424
  • database: ena
  • NCBI tax ID: 316067

Genome sequences

  • @ref: 66792
  • description: Geotalea daltonii FRC-32
  • accession: GCA_000022265
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 316067

GC content

@refGC-contentmethod
1623053sequence analysis
2932053

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes73.45no
flagellatedno85.998no
gram-positiveno98.518yes
anaerobicyes96.776no
aerobicno97.136yes
halophileno90.447no
spore-formingno92.379yes
thermophileno93.415yes
glucose-utilno62.83no
glucose-fermentno87.091no

External links

@ref: 16230

culture collection no.: DSM 22248, JCM 15807

straininfo link

  • @ref: 75286
  • straininfo: 403938

literature

  • topic: Phylogeny
  • Pubmed-ID: 19654355
  • title: Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination.
  • authors: Prakash O, Gihring TM, Dalton DD, Chin KJ, Green SJ, Akob DM, Wanger G, Kostka JE
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.010843-0
  • year: 2009
  • mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Ferric Compounds/*metabolism, Geobacter/*classification/genetics/*isolation & purification/metabolism, Hydrocarbons/*metabolism, Metals, Heavy/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Uranium/*metabolism, Water Pollutants, Chemical/*metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16230Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22248)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22248
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29320Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2573228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75286Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403938.1StrainInfo: A central database for resolving microbial strain identifiers