General

@ref: 5115

BacDive-ID: 5799

DSM-Number: 13690

keywords: Bacteria, anaerobe, mesophilic

description: Geobacter grbiciae TACP-5 is an anaerobe, mesophilic bacterium that was isolated from freshwater aquatic sediment.

NCBI tax id

• NCBI tax id: 155042
• Matching level: species

strain history

• @ref: 5115
• history: <- J. D. Coates, Southern Illinois University Carbondale, USA; TACP-5 <- J. D. Coates {1994}

doi: 10.13145/bacdive5799.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Deltaproteobacteria
• order: Desulfuromonadales
• family: Geobacteraceae
• genus: Geobacter
• species: Geobacter grbiciae
• full scientific name: Geobacter grbiciae Coates et al. 2001

@ref: 5115

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Geobacteraceae

genus: Geobacter

species: Geobacter grbiciae

full scientific name: Geobacter grbiciae Coates et al. 2001

strain designation: TACP-5

type strain: no

Morphology

colony morphology

• @ref: 5115
• incubation period: 3-7 days

Culture and growth conditions

culture medium

• @ref: 5115
• name: GEOBACTER MEDIUM (DSMZ Medium 579)
• growth: yes
• link: https://mediadive.dsmz.de/medium/579
• composition: Name: GEOBACTER MEDIUM (DSMZ Medium 579) Composition: Fe(III) citrate 13.5509 g/l Na-acetate 2.4728 g/l NaHCO3 2.4728 g/l NH4Cl 1.48368 g/l NaH2PO4 0.593472 g/l KCl 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l NiCl2 x 6 H2O 0.000296736 g/l Na2WO4 x 2 H2O 0.00024728 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

• @ref: 5115
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 5115
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

• @ref: 5115
• sample type: freshwater aquatic sediment
• geographic location: Virginia, Potomac River Estuary
• country: USA
• origin.country: USA
• continent: North America

isolation source categories

Safety information

risk assessment

• @ref: 5115
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

GC content

• @ref: 5115
• GC-content: 57.3
• method: high performance liquid chromatography (HPLC)

External links

@ref: 5115

culture collection no.: DSM 13690

straininfo link

• @ref: 75278
• straininfo: 44272

literature

• topic: Phylogeny
• Pubmed-ID: 11321104
• title: Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers.
• authors: Coates JD, Bhupathiraju VK, Achenbach LA, Mclnerney MJ, Lovley DR
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/00207713-51-2-581
• year: 2001
• mesh: Base Composition, Deltaproteobacteria/classification/isolation & purification/*metabolism, Ferric Compounds/*metabolism, Gram-Negative Anaerobic Straight, Curved, and Helical Rods/classification/isolation & purification/*metabolism, Hydrocarbons/metabolism, Iron/*metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidation-Reduction, RNA, Ribosomal, 16S/genetics
• topic2: Metabolism

Reference