Strain identifier

BacDive ID: 5797

Type strain: Yes

Species: Pelotalea chapellei

Strain Designation: 172

Strain history: <- J. D. Coates, Southern Illinois University Carbondale, USA; 172 <- J. D. Coates {1994}

NCBI tax ID(s): 44671 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4953

BacDive-ID: 5797

DSM-Number: 13688

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Pelotalea chapellei 172 is an anaerobe, mesophilic, motile bacterium that was isolated from deep aquifer sediments.

NCBI tax id

  • NCBI tax id: 44671
  • Matching level: species

strain history

  • @ref: 4953
  • history: <- J. D. Coates, Southern Illinois University Carbondale, USA; 172 <- J. D. Coates {1994}

doi: 10.13145/bacdive5797.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Geobacteraceae
  • genus: Pelotalea
  • species: Pelotalea chapellei
  • full scientific name: Pelotalea chapellei (Coates et al. 2001) Xu et al. 2022
  • synonyms

    @refsynonym
    20215Pseudopelobacter chapellei
    20215Geobacter chapellei

@ref: 4953

domain: Bacteria

phylum: Pseudomonadota

class: Deltaproteobacteria

order: Desulfuromonadales

family: Geobacteraceae

genus: Pelotalea

species: Pelotalea chapellei

full scientific name: Pelotalea chapellei

strain designation: 172

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.932
6948099.993negative

colony morphology

  • @ref: 4953
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 4953
  • name: GEOBACTER SULFURREDUCENS MEDIUM (DSMZ Medium 826)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/826
  • composition: Name: GEOBACTER SULFURREDUCENS MEDIUM (DSMZ Medium 826) Composition: Na2-fumarate 7.91296 g/l NaHCO3 2.4728 g/l NH4Cl 1.48368 g/l Na-acetate 0.811078 g/l Na2HPO4 0.593472 g/l KCl 0.098912 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l ZnSO4 x 7 H2O 0.00178042 g/l CoSO4 x 7 H2O 0.00178042 g/l CaCl2 x 2 H2O 0.00098912 g/l FeSO4 x 7 H2O 0.00098912 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Pyridoxine hydrochloride 9.8912e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water

culture temp

  • @ref: 4953
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
4953anaerobe
69480anaerobe98.65

spore formation

@refspore formationconfidence
69481no100
69480no99.933

Isolation, sampling and environmental information

isolation

  • @ref: 4953
  • sample type: deep aquifer sediments
  • geographic location: Atlantic Coastal Plain, South Carolina
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Groundwater
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_172703.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15357;96_905;97_31932;98_113119;99_172703&stattab=map
  • Last taxonomy: Geobacter chapellei subclade
  • 16S sequence: U41561
  • Sequence Identity:
  • Total samples: 8
  • soil counts: 7
  • aquatic counts: 1

Safety information

risk assessment

  • @ref: 4953
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4953
  • description: Geobacter chapellei strain 172 16S ribosomal RNA gene, partial sequence
  • accession: U41561
  • length: 1472
  • database: ena
  • NCBI tax ID: 44671

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pelotalea chapellei DSM 13688GCA_018531195contigncbi44671
66792Geobacter chapellei strain DSM 1368844671.3wgspatric44671

GC content

@refGC-contentmethod
495350.2high performance liquid chromatography (HPLC)
495351.1sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.85no
anaerobicyes96.019yes
halophileno93.86no
spore-formingno87.626no
glucose-utilno62.276no
aerobicno91.683no
flagellatedno73.297no
thermophileno96.675yes
motileyes83.177no
glucose-fermentno87.865no

External links

@ref: 4953

culture collection no.: DSM 13688, ATCC 51744

straininfo link

  • @ref: 75276
  • straininfo: 49509

Reference

@idauthorscataloguedoi/urltitle
4953Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13688)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13688
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75276Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49509.1StrainInfo: A central database for resolving microbial strain identifiers