Strain identifier

BacDive ID: 5790

Type strain: Yes

Species: Geothermobacter ehrlichii

Strain Designation: SSO15

Strain history: K. Kashefi SS015.

NCBI tax ID(s): 213224 (species)

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General

@ref: 5790

BacDive-ID: 5790

DSM-Number: 15274

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, thermophilic

description: Geothermobacter ehrlichii SSO15 is an anaerobe, thermophilic bacterium that was isolated from hydrothermal vent.

NCBI tax id

  • NCBI tax id: 213224
  • Matching level: species

strain history

@refhistory
5790<- K. Kashefi, University of Massachusetts, Department of Microbiology, USA; SSO15 <- K. Kashefi {2000}
67770K. Kashefi SS015.

doi: 10.13145/bacdive5790.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfuromonadales
  • family: Geobacteraceae
  • genus: Geothermobacter
  • species: Geothermobacter ehrlichii
  • full scientific name: Geothermobacter ehrlichii Kashefi et al. 2005

@ref: 5790

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfuromonadales

family: Geobacteraceae

genus: Geothermobacter

species: Geothermobacter ehrlichii

full scientific name: Geothermobacter ehrlichii Kashefi et al. 2005

strain designation: SSO15

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 5790
  • name: GEOTHERMOBACTER MEDIUM (DSMZ Medium 981)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/981
  • composition: Name: GEOTHERMOBACTER MEDIUM (DSMZ Medium 981) Composition: NaCl 18.9432 g/l MgCl2 x 6 H2O 8.97308 g/l DL-Malic acid 1.33599 g/l KNO3 1.00698 g/l Na2CO3 0.997009 g/l KCl 0.498504 g/l KH2PO4 0.418744 g/l CaCl2 x 2 H2O 0.299103 g/l MgSO4 x 7 H2O 0.149551 g/l Yeast extract 0.0997009 g/l (NH4)2SO4 0.0997009 g/l NaBr 0.0498504 g/l L-Cysteine HCl x H2O 0.0498504 g/l SrCl2 x 6 H2O 0.0199402 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
5790positivegrowth50thermophilic
67770positivegrowth55thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 5790
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5790hydrothermal ventOregon, 300 miles west of Cannon BeachUSAUSANorth America
67770Hydrothermal vent system of the Axial Seamount, Juan de Fuca Ridge

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Hydrothermal vent
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_168605.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_50;96_42956;97_81690;98_110621;99_168605&stattab=map
  • Last taxonomy: Geothermobacter ehrlichii subclade
  • 16S sequence: AY155599
  • Sequence Identity:
  • Total samples: 242
  • soil counts: 38
  • aquatic counts: 187
  • animal counts: 9
  • plant counts: 8

Safety information

risk assessment

  • @ref: 5790
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5790
  • description: Geothermobacter ehrlichii 16S ribosomal RNA gene, partial sequence
  • accession: AY155599
  • length: 1399
  • database: ena
  • NCBI tax ID: 213224

Genome sequences

  • @ref: 66792
  • description: Geothermobacter ehrlichii DSM 15274
  • accession: 2784746791
  • assembly level: draft
  • database: img
  • NCBI tax ID: 213224

GC content

  • @ref: 5790
  • GC-content: 62.6

External links

@ref: 5790

culture collection no.: DSM 15274, ATCC BAA 635, JCM 12418

straininfo link

  • @ref: 75269
  • straininfo: 138006

literature

  • topic: Phylogeny
  • Pubmed-ID: 12732575
  • title: Thermophily in the Geobacteraceae: Geothermobacter ehrlichii gen. nov., sp. nov., a novel thermophilic member of the Geobacteraceae from the "Bag City" hydrothermal vent.
  • authors: Kashefi K, Holmes DE, Baross JA, Lovley DR
  • journal: Appl Environ Microbiol
  • DOI: 10.1128/AEM.69.5.2985-2993.2003
  • year: 2003
  • mesh: Base Composition, Cytochromes/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Deltaproteobacteria/classification/genetics/*isolation & purification/*metabolism, Drug Resistance, Bacterial, Ecosystem, Electron Transport, Geologic Sediments/microbiology, Hot Temperature, Hydrogen-Ion Concentration, Iron/metabolism, Microscopy, Electron, Molecular Sequence Data, Oxidation-Reduction, Pacific Ocean, Phylogeny, Seawater/*microbiology, Sodium Chloride, Species Specificity
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
5790Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15274)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15274
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75269Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138006.1StrainInfo: A central database for resolving microbial strain identifiers