Strain identifier

BacDive ID: 5780

Type strain: Yes

Species: Ilyobacter insuetus

Strain Designation: VenChi2

Strain history: <- A. Brune and B. Schink, VenChi2

NCBI tax ID(s): 167643 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2842

BacDive-ID: 5780

DSM-Number: 6831

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Ilyobacter insuetus VenChi2 is an anaerobe, mesophilic bacterium that was isolated from marine anoxic sediment.

NCBI tax id

  • NCBI tax id: 167643
  • Matching level: species

strain history

  • @ref: 2842
  • history: <- A. Brune and B. Schink, VenChi2

doi: 10.13145/bacdive5780.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Ilyobacter
  • species: Ilyobacter insuetus
  • full scientific name: Ilyobacter insuetus Brune et al. 2002

@ref: 2842

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Ilyobacter

species: Ilyobacter insuetus

full scientific name: Ilyobacter insuetus Brune et al. 2002

strain designation: VenChi2

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2842
  • name: PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/293
  • composition: Name: PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293; with strain-specific modifications) Composition: NaCl 19.98 g/l MgCl2 x 6 H2O 2.997 g/l Na2CO3 1.24875 g/l Quinic acid 0.999001 g/l KCl 0.499501 g/l Na2S x 9 H2O 0.35964 g/l NH4Cl 0.24975 g/l KH2PO4 0.1998 g/l CaCl2 x 2 H2O 0.14985 g/l HCl 0.0024975 g/l FeCl2 x 4 H2O 0.0014985 g/l Sodium resazurin 0.0004995 g/l CoCl2 x 6 H2O 0.00018981 g/l MnCl2 x 4 H2O 9.99001e-05 g/l ZnCl2 6.99301e-05 g/l Na2MoO4 x 2 H2O 3.5964e-05 g/l NiCl2 x 6 H2O 2.3976e-05 g/l H3BO3 5.99401e-06 g/l CuCl2 x 2 H2O 1.998e-06 g/l Distilled water

culture temp

  • @ref: 2842
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2842
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 2842
  • sample type: marine anoxic sediment
  • geographic location: Venice
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Condition#Anoxic (anaerobic)

Safety information

risk assessment

  • @ref: 2842
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2842
  • description: Ilyobacter insuetus 16S rRNA gene, DSM 6831 T
  • accession: AJ307980
  • length: 1510
  • database: ena
  • NCBI tax ID: 167643

GC content

  • @ref: 2842
  • GC-content: 35.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 2842

culture collection no.: DSM 6831, CCUG 48290

straininfo link

  • @ref: 75259
  • straininfo: 48301

literature

  • topic: Phylogeny
  • Pubmed-ID: 11931152
  • title: Ilyobacter insuetus sp. nov., a fermentative bacterium specialized in the degradation of hydroaromatic compounds.
  • authors: Brune A, Evers S, Kaim G, Ludwig W, Schink B
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-2-429
  • year: 2002
  • mesh: Biodegradation, Environmental, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fermentation, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/metabolism, Molecular Sequence Data, Phylogeny, Quinic Acid/metabolism, RNA, Ribosomal, 16S/chemistry, RNA, Ribosomal, 23S/chemistry, Sequence Analysis, DNA, Shikimic Acid/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
2842Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6831)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6831
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
75259Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48301.1StrainInfo: A central database for resolving microbial strain identifiers