General

@ref: 1064

BacDive-ID: 5778

DSM-Number: 2382

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Ilyobacter tartaricus GraTa2 is an anaerobe, mesophilic bacterium that was isolated from mud.

NCBI tax id

• NCBI tax id: 167644
• Matching level: species

strain history

• @ref: 1064
• history: <- B. Schink, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; GraTa2 <- B. Schink {1981}

doi: 10.13145/bacdive5778.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/fusobacteriota
• domain: Bacteria
• phylum: Fusobacteriota
• class: Fusobacteriia
• order: Fusobacteriales
• family: Fusobacteriaceae
• genus: Ilyobacter
• species: Ilyobacter tartaricus
• full scientific name: Ilyobacter tartaricus Schink 1985

@ref: 1064

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Ilyobacter

species: Ilyobacter tartaricus

full scientific name: Ilyobacter tartaricus Schink 1985

strain designation: GraTa2

type strain: yes

Culture and growth conditions

culture medium

• @ref: 1064
• name: PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293)
• growth: yes
• link: https://mediadive.dsmz.de/medium/293
• composition: Name: PROPIONIGENIUM MODESTUM MEDIUM (MARINE) (DSMZ Medium 293; with strain-specific modifications) Composition: NaCl 19.98 g/l MgCl2 x 6 H2O 2.997 g/l Na-tartrate 1.998 g/l Na2CO3 1.24875 g/l KCl 0.499501 g/l Na2S x 9 H2O 0.35964 g/l NH4Cl 0.24975 g/l KH2PO4 0.1998 g/l CaCl2 x 2 H2O 0.14985 g/l HCl 0.0024975 g/l FeCl2 x 4 H2O 0.0014985 g/l Sodium resazurin 0.0004995 g/l CoCl2 x 6 H2O 0.00018981 g/l MnCl2 x 4 H2O 9.99001e-05 g/l ZnCl2 6.99301e-05 g/l Na2MoO4 x 2 H2O 3.5964e-05 g/l NiCl2 x 6 H2O 2.3976e-05 g/l H3BO3 5.99401e-06 g/l CuCl2 x 2 H2O 1.998e-06 g/l Distilled water

culture temp

• @ref: 1064
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 1064
• oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

• @ref: 1064
• sample type: mud
• geographic location: Venice, Canale Grande
• country: Italy
• origin.country: ITA
• continent: Europe

isolation source categories

• Cat1: #Environmental
• Cat2: #Terrestrial
• Cat3: #Mud (Sludge)

Safety information

risk assessment

• @ref: 1064
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 1064
• description: Ilyobacter tartaricus 16S rRNA gene, DSM 2382 T
• accession: AJ307982
• length: 1515
• database: ena
• NCBI tax ID: 167644

GC content

• @ref: 1064
• GC-content: 33.2

External links

@ref: 1064

culture collection no.: DSM 2382, ATCC 35898

straininfo link

• @ref: 75257
• straininfo: 46808

literature

• topic: Genetics
• Pubmed-ID: 12531483
• title: Complete DNA sequence of the atp operon of the sodium-dependent F1Fo ATP synthase from Ilyobacter tartaricus and identification of the encoded subunits.
• authors: Meier T, von Ballmoos C, Neumann S, Kaim G
• journal: Biochim Biophys Acta
• DOI: 10.1016/s0167-4781(02)00625-5
• year: 2003
• mesh: Adenosine Triphosphate/biosynthesis/genetics, Amino Acid Sequence, Binding Sites, Codon, Initiator, DNA/chemistry, Genes, Bacterial, Gram-Negative Anaerobic Bacteria/enzymology/*genetics, Molecular Sequence Data, Operon, Peptide Fragments/chemistry, Protein Subunits/chemistry, Proton-Translocating ATPases/chemistry/*genetics, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Trypsin
• topic2: Enzymology

Reference