Strain identifier

BacDive ID: 5777

Type strain: Yes

Species: Ilyobacter polytropus

Culture col. no.: DSM 2926, CuHbu CuHBu1

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1252

BacDive-ID: 5777

DSM-Number: 2926

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, mesophilic

description: Ilyobacter polytropus DSM 2926 is an anaerobe, mesophilic bacterium that was isolated from marine mud.

strain history: <- M. Stieb and B. Schink, CuHBu1

doi: 10.13145/bacdive5777.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteria
  • domain: Bacteria
  • phylum: Fusobacteria
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Ilyobacter
  • species: Ilyobacter polytropus
  • full scientific name: Ilyobacter polytropus Stieb and Schink 1985

@ref: 1252

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Ilyobacter

species: Ilyobacter polytropus

full scientific name: Ilyobacter polytropus Stieb and Schink 1985

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1252
  • name: ILYOBACTER POLYTROPUS MEDIUM (DSMZ Medium 314), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium314.pdf

culture temp

  • @ref: 1252
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1252
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1252
  • sample type: marine mud
  • geographic location: Cuxhaven
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Mud (Sludge)

Safety information

risk assessment

  • @ref: 1252
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1252
  • description: Ilyobacter polytropus 16S rRNA gene, DSM 2926 T
  • accession: AJ307981
  • length: 1516
  • database: ena
  • NCBI tax ID: 572544

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ilyobacter polytropus DSM 2926GCA_000165505completencbi572544
66792Ilyobacter polytropus SZUA-427GCA_003246855contigncbi167642
66792Ilyobacter polytropus DSM 2926572544.12plasmidpatric572544
66792Ilyobacter polytropus DSM 2926572544.3completepatric572544
66792Ilyobacter polytropus DSM 2926572544.11plasmidpatric572544
66792Ilyobacter polytropus strain SZUA-427167642.3wgspatric167642
66792Ilyobacter polytropus CuHBu1, DSM 2926649633056completeimg572544

GC content

  • @ref: 1252
  • GC-content: 32.2

External links

@ref: 1252

culture collection no.: DSM 2926, CuHbu CuHBu1

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/158229

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1252Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2926)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2926
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)