Strain identifier

BacDive ID: 5768

Type strain: Yes

Species: Fusobacterium equinum

Strain history: CIP <- 2002, JCM <- D.N. Love <- VPB: strain 4027

NCBI tax ID(s): 134605 (species)

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General

@ref: 7011

BacDive-ID: 5768

DSM-Number: 17476

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Fusobacterium equinum DSM 17476 is an anaerobe, mesophilic, Gram-negative animal pathogen that was isolated from horse, purulent paraoral lesion.

NCBI tax id

  • NCBI tax id: 134605
  • Matching level: species

strain history

@refhistory
7011<- NCTC <- D.N.Love, VPB 4027
67770D. N. Love VPB 4027.
119121CIP <- 2002, JCM <- D.N. Love <- VPB: strain 4027

doi: 10.13145/bacdive5768.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Fusobacterium
  • species: Fusobacterium equinum
  • full scientific name: Fusobacterium equinum Dorsch et al. 2001

@ref: 7011

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Fusobacterium

species: Fusobacterium equinum

full scientific name: Fusobacterium equinum Dorsch et al. 2001

type strain: yes

Morphology

cell morphology

  • @ref: 119121
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 119121

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7011PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
7011COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
39893MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
119121CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
7011positivegrowth37mesophilic
39893positivegrowth37mesophilic
58728positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7011anaerobe
58728anaerobe
119121anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11912117108D-arabinose-degradation
11912115824D-fructose-degradation
11912117634D-glucose-degradation
11912165327D-xylose-degradation
11912117057cellobiose-degradation
11912117716lactose-degradation
11912117306maltose-degradation
11912117814salicin-degradation
11912117992sucrose-degradation
1191214853esculin-hydrolysis
11912117632nitrate-reduction
11912116301nitrite-reduction
11912135020tributyrin+hydrolysis

metabolite production

  • @ref: 119121
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
119121oxidase-
119121beta-galactosidase-3.2.1.23
119121gelatinase-
119121amylase-
119121DNase-
119121caseinase+3.4.21.50
119121catalase-1.11.1.6
119121tween esterase-
119121lecithinase+
119121lipase+
119121protease+
119121urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119121---+----------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7011horse, purulent paraoral lesionAustraliaAUSAustralia and Oceania
67770Horse pus
119121Animal, Horse, pus

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Equidae (Horse)
#Host Body-Site#Oral cavity and airways
#Host Body-Site#Other#Wound
#Host Body Product#Fluids

taxonmaps

  • @ref: 69479
  • File name: preview.99_63246.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_140;96_874;97_1022;98_1205;99_63246&stattab=map
  • Last taxonomy: Fusobacterium equinum
  • 16S sequence: AJ295750
  • Sequence Identity:
  • Total samples: 939
  • soil counts: 5
  • aquatic counts: 4
  • animal counts: 929
  • plant counts: 1

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
7011yes2Risk group (German classification)
1191211Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Fusobacterium equinum gene for 16S ribosomal RNA, partial sequence, strain: JCM 11174AB6391441469ena134605
7011Fusobacterium equorum partial 16S rRNA gene, strain horseAJ2957501472ena134605

GC content

@refGC-contentmethod
701129
6777030thermal denaturation, midpoint method (Tm)

External links

@ref: 7011

culture collection no.: DSM 17476, CIP 107406, JCM 11174, NCTC 13176, CCUG 50051, VPB 4027, KCTC 15082

straininfo link

  • @ref: 75247
  • straininfo: 100653

literature

  • topic: Phylogeny
  • Pubmed-ID: 11760934
  • title: Fusobacterium equinum sp. nov., from the oral cavity of horses.
  • authors: Dorsch M, Lovet DN, Bailey GD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-6-1959
  • year: 2001
  • mesh: Animals, DNA, Ribosomal/genetics, Fusobacterium Infections/genetics/microbiology/veterinary, Fusobacterium necrophorum/*classification/genetics/isolation & purification, Horse Diseases/*microbiology, Horses/*microbiology, Molecular Sequence Data, Mouth/*microbiology, Mouth Diseases/microbiology/*veterinary, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7011Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17476)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17476
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39893Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4837
58728Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50051)https://www.ccug.se/strain?id=50051
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75247Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100653.1StrainInfo: A central database for resolving microbial strain identifiers
119121Curators of the CIPCollection of Institut Pasteur (CIP 107406)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107406