Strain identifier

BacDive ID: 5766

Type strain: Yes

Species: Fusobacterium canifelinum

Strain history: KCTC 5838 <-- J. K. Kook <-- CCUG 49733 <-- G. Conrads RMA 1036.

NCBI tax ID(s): 285729 (species)

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General

@ref: 5991

BacDive-ID: 5766

DSM-Number: 15542

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Fusobacterium canifelinum DSM 15542 is an anaerobe, mesophilic bacterium that was isolated from purulent dog-bite wound in a human patient.

NCBI tax id

  • NCBI tax id: 285729
  • Matching level: species

strain history

@refhistory
5991<- G. Conrads; RMA 1036 <- RM Alden Res. Lab., Los Angeles <- D. M. Citron
67770KCTC 5838 <-- J. K. Kook <-- CCUG 49733 <-- G. Conrads RMA 1036.

doi: 10.13145/bacdive5766.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Fusobacterium
  • species: Fusobacterium canifelinum
  • full scientific name: Fusobacterium canifelinum corrig. Conrads et al. 2004

  • synonyms

    • @ref: 20215
    • synonym: Fusobacterium canium

@ref: 5991

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Fusobacterium

species: Fusobacterium canifelinum

full scientific name: Fusobacterium canifelinum Conrads et al. 2004

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5991PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
5991COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
5991positivegrowth37mesophilic
58686positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5991anaerobe
58686anaerobe

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    58686C12:01.712
    58686C14:036.714
    58686C15:00.515
    58686C16:012.316
    58686C18:00.418
    58686C13:0 3OH/C15:1 i I/H2.214.469
    58686C13:0 ISO 2OH0.713.814
    58686C13:1 at 12-130.712.931
    58686C14:0 3OH/C16:1 ISO I5.815.485
    58686C14:1 ω5c0.413.899
    58686C15:0 ISO0.214.621
    58686C16:0 3OH4.717.52
    58686C16:0 aldehyde0.714.949
    58686C16:1 ω5c0.515.908
    58686C16:1 ω7c21.215.819
    58686C16:1 ω7c DMA116.288
    58686C17:1 ω5c ISO1.816.461
    58686C18:1 ω7c /12t/9t1.817.824
    58686C18:1 ω9c1.317.769
    58686C18:2 ω6,9c/C18:0 ANTE517.724
    58686unknown 14.7760.414.776
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
5991purulent dog-bite wound in a human patientCaliforniaUSAUSANorth America
58686Human wound,purulent,dog-biteCA,Santa Monica,Alden Research LabUSAUSANorth America1977
67770Purulent dog-bite wound in a human patient

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Other#Wound
#Host Body Product#Fluids

taxonmaps

  • @ref: 69479
  • File name: preview.99_712.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_140;96_436;97_498;98_572;99_712&stattab=map
  • Last taxonomy: Fusobacterium
  • 16S sequence: AY162221
  • Sequence Identity:
  • Total samples: 12265
  • soil counts: 65
  • aquatic counts: 197
  • animal counts: 11939
  • plant counts: 64

Safety information

risk assessment

  • @ref: 5991
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
5991Fusobacterium canifelinum strain RMA 1036 16S ribosomal RNA gene, partial sequenceAY1622211458ena285729
67770Fusobacterium canifelinum gene for 16S ribosomal RNA, partial sequence, strain: JCM 17464AB6161321391ena285729

Genome sequences

  • @ref: 66792
  • description: Fusobacterium canifelinum strain FDAARGOS_1126
  • accession: 285729.7
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 285729

GC content

@refGC-contentmethod
599126
6777026-28thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno92.111no
anaerobicyes99.505yes
halophileno73.592no
spore-formingno88.448no
glucose-utilyes81.823no
motileno91.172no
flagellatedno94.995no
aerobicno98.743no
thermophileno99.266yes
glucose-fermentyes59.804no

External links

@ref: 5991

culture collection no.: DSM 15542, ATCC BAA 689, CCUG 49733, RMA 1036, JCM 17464, KCTC 5838

straininfo link

  • @ref: 75245
  • straininfo: 134421

literature

  • topic: Phylogeny
  • Pubmed-ID: 15368845
  • title: Fusobacterium canifelinum sp. nov., from the oral cavity of cats and dogs.
  • authors: Conrads G, Citron DM, Mutters R, Jang S, Goldstein EJ
  • journal: Syst Appl Microbiol
  • DOI: 10.1078/0723202041438509
  • year: 2004
  • mesh: Animals, Anti-Bacterial Agents/pharmacology, Bites and Stings, Cat Diseases/*microbiology, Cats, DNA, Ribosomal Spacer/analysis, Dog Diseases/*microbiology, Dogs, Drug Resistance, Bacterial, Fluoroquinolones/pharmacology, Fusobacterium/*classification/drug effects/genetics/isolation & purification, Fusobacterium Infections/microbiology/*veterinary, Humans, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitle
5991Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15542)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15542
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
58686Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 49733)https://www.ccug.se/strain?id=49733
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75245Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID134421.1StrainInfo: A central database for resolving microbial strain identifiers