Strain identifier
BacDive ID: 5766
Type strain: 
Species: Fusobacterium canifelinum
Strain history: KCTC 5838 <-- J. K. Kook <-- CCUG 49733 <-- G. Conrads RMA 1036.
NCBI tax ID(s): 285729 (species)
version 9.1 (current version)
General
@ref: 5991
BacDive-ID: 5766
DSM-Number: 15542
keywords: genome sequence, 16S sequence, Bacteria, anaerobe
description: Fusobacterium canifelinum DSM 15542 is an anaerobe bacterium that was isolated from purulent dog-bite wound in a human patient.
NCBI tax id
- NCBI tax id: 285729
- Matching level: species
strain history
| @ref | history |
|---|---|
| 5991 | <- G. Conrads; RMA 1036 <- RM Alden Res. Lab., Los Angeles <- D. M. Citron |
| 67770 | KCTC 5838 <-- J. K. Kook <-- CCUG 49733 <-- G. Conrads RMA 1036. |
doi: 10.13145/bacdive5766.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Fusobacteriaceae
- genus: Fusobacterium
- species: Fusobacterium canifelinum
- full scientific name: Fusobacterium canifelinum corrig. Conrads et al. 2004
synonyms
- @ref: 20215
- synonym: Fusobacterium canium
@ref: 5991
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Fusobacteriaceae
genus: Fusobacterium
species: Fusobacterium canifelinum
full scientific name: Fusobacterium canifelinum Conrads et al. 2004
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5991 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | yes | https://mediadive.dsmz.de/medium/104 | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| 5991 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 5991 | positive | growth | 37 |
| 58686 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 5991 | anaerobe |
| 58686 | anaerobe |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 58686 C12:0 1.7 12 58686 C14:0 36.7 14 58686 C15:0 0.5 15 58686 C16:0 12.3 16 58686 C18:0 0.4 18 58686 C13:0 3OH/C15:1 i I/H 2.2 14.469 58686 C13:0 ISO 2OH 0.7 13.814 58686 C13:1 at 12-13 0.7 12.931 58686 C14:0 3OH/C16:1 ISO I 5.8 15.485 58686 C14:1 ω5c 0.4 13.899 58686 C15:0 ISO 0.2 14.621 58686 C16:0 3OH 4.7 17.52 58686 C16:0 aldehyde 0.7 14.949 58686 C16:1 ω5c 0.5 15.908 58686 C16:1 ω7c 21.2 15.819 58686 C16:1 ω7c DMA 1 16.288 58686 C17:1 ω5c ISO 1.8 16.461 58686 C18:1 ω7c /12t/9t 1.8 17.824 58686 C18:1 ω9c 1.3 17.769 58686 C18:2 ω6,9c/C18:0 ANTE 5 17.724 58686 unknown 14.776 0.4 14.776 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 5991 | purulent dog-bite wound in a human patient | California | USA | USA | North America | |
| 58686 | Human wound,purulent,dog-bite | CA,Santa Monica,Alden Research Lab | USA | USA | North America | 1977 |
| 67770 | Purulent dog-bite wound in a human patient |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host | #Mammals | #Canidae (Dog) |
| #Host Body-Site | #Other | #Wound |
| #Host Body Product | #Fluids |
taxonmaps
- @ref: 69479
- File name: preview.99_712.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_140;96_436;97_498;98_572;99_712&stattab=map
- Last taxonomy: Fusobacterium
- 16S sequence: AY162221
- Sequence Identity:
- Total samples: 12265
- soil counts: 65
- aquatic counts: 197
- animal counts: 11939
- plant counts: 64
Safety information
risk assessment
- @ref: 5991
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 5991 | Fusobacterium canifelinum strain RMA 1036 16S ribosomal RNA gene, partial sequence | AY162221 | 1458 | nuccore | 285729 |
| 67770 | Fusobacterium canifelinum gene for 16S ribosomal RNA, partial sequence, strain: JCM 17464 | AB616132 | 1391 | nuccore | 285729 |
| 124043 | Fusobacterium canifelinum JCM 17464 gene for 16S rRNA, partial sequence. | LC752381 | 562 | nuccore | 285729 |
Genome sequences
- @ref: 66792
- description: Fusobacterium canifelinum strain FDAARGOS_1126
- accession: 285729.7
- assembly level: complete
- database: patric
- NCBI tax ID: 285729
GC content
| @ref | GC-content | method |
|---|---|---|
| 5991 | 26 | |
| 67770 | 26-28 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 87.408 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.98 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 82.306 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.651 | yes |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 93.252 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 83 | no |
External links
@ref: 5991
culture collection no.: DSM 15542, ATCC BAA-689, CCUG 49733, RMA 1036, JCM 17464, KCTC 5838
straininfo link
- @ref: 75245
- straininfo: 134421
literature
- topic: Phylogeny
- Pubmed-ID: 15368845
- title: Fusobacterium canifelinum sp. nov., from the oral cavity of cats and dogs.
- authors: Conrads G, Citron DM, Mutters R, Jang S, Goldstein EJ
- journal: Syst Appl Microbiol
- DOI: 10.1078/0723202041438509
- year: 2004
- mesh: Animals, Anti-Bacterial Agents/pharmacology, Bites and Stings, Cat Diseases/*microbiology, Cats, DNA, Ribosomal Spacer/analysis, Dog Diseases/*microbiology, Dogs, Drug Resistance, Bacterial, Fluoroquinolones/pharmacology, Fusobacterium/*classification/drug effects/genetics/isolation & purification, Fusobacterium Infections/microbiology/*veterinary, Humans, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5991 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15542) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15542 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 58686 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 49733) | https://www.ccug.se/strain?id=49733 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 75245 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID134421.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |