Strain identifier
BacDive ID: 5755
Type strain: 
Species: Frankia colletiae
Strain Designation: Cc1.17
Strain history: <- Akkermanns, CC 1.17
NCBI tax ID(s): 573497 (species)
version 8.1 (current version)
General
@ref: 11315
BacDive-ID: 5755
DSM-Number: 43829
keywords: genome sequence, Bacteria, mesophilic
description: Frankia colletiae Cc1.17 is a mesophilic bacterium that was isolated from Colletia crucita.
NCBI tax id
- NCBI tax id: 573497
- Matching level: species
strain history
- @ref: 11315
- history: <- Akkermanns, CC 1.17
doi: 10.13145/bacdive5755.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Frankiales
- family: Frankiaceae
- genus: Frankia
- species: Frankia colletiae
- full scientific name: Frankia colletiae Nouioui et al. 2023
synonyms
- @ref: 20215
- synonym: Parafrankia colletiae
@ref: 11315
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Frankiaceae
genus: Frankia
species: Frankia sp.
full scientific name: Frankia sp.
strain designation: Cc1.17
type strain: no
Morphology
colony morphology
- @ref: 11315
- incubation period: >14 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11315 | BAP+ MEDIUM FOR FRANKIA (DSMZ Medium 1536) | yes | https://mediadive.dsmz.de/medium/1536 | Name: BAP+ MEDIUM FOR FRANKIA (DSMZ Medium 1536) Composition: KH2PO4 0.95 g/l K2HPO4 0.6 g/l Na-propionate 0.48 g/l NH4Cl 0.27 g/l MgSO4 x 7 H2O 0.025 g/l Citric acid 0.01 g/l Eisencitrat 0.01 g/l CaCl2 x 2 H2O 0.01 g/l H3BO3 0.00286 g/l MnCl2 x 4 H2O 0.00181 g/l Pyridoxine hydrochloride 0.0005 g/l Nicotinic acid 0.0005 g/l ZnSO4 x 7 H2O 0.00022 g/l Thiamine HCl 0.0001 g/l CuSO4 x 5 H2O 8e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l CoSO4 x 7 H2O 1e-06 g/l Distilled water |
| 11315 | DPM MEDIUM (DSMZ Medium 737) | yes | https://mediadive.dsmz.de/medium/737 | Name: DPM MEDIUM (DSMZ Medium 737) Composition: Na-propionate 1.2 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.1 g/l Na2-EDTA 0.013608 g/l CaCl2 x 2 H2O 0.01 g/l FeSO4 x 7 H2O 0.009972 g/l H3BO3 0.00286 g/l MnCl2 x 4 H2O 0.00181 g/l ZnSO4 x 7 H2O 0.00022 g/l CuSO4 x 5 H2O 8e-05 g/l CoCl2 2.5e-05 g/l Na2MoO4 x 2 H2O 2.5e-05 g/l Distilled water |
culture temp
- @ref: 11315
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11315
- sample type: Colletia crucita
- host species: Colletia crucita
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Shrub (Scrub)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Parafrankia colletiae Cc1.17 | GCA_001854655 | contig | ncbi | 573497 |
| 66792 | Frankia sp. Cc1.17 | 573497.4 | wgs | patric | 573497 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 89.209 | no |
| anaerobic | no | 98.575 | no |
| halophile | no | 95.678 | no |
| spore-forming | yes | 81.133 | no |
| glucose-util | yes | 78.51 | no |
| thermophile | no | 98.101 | no |
| motile | no | 94.514 | no |
| flagellated | no | 98.518 | no |
| aerobic | yes | 89.327 | no |
| glucose-ferment | no | 91.006 | no |
External links
@ref: 11315
culture collection no.: DSM 43829, CC 1.17
straininfo link
- @ref: 75234
- straininfo: 50433
literature
- topic: Genetics
- Pubmed-ID: 28619804
- title: Permanent Draft Genome Sequence for Frankia sp. Strain Cc1.17, a Nitrogen-Fixing Actinobacterium Isolated from Root Nodules of Colletia cruciata.
- authors: Swanson E, Oshone R, Nouioui I, Abebe-Akele F, Simpson S, Morris K, Thomas WK, Sen A, Ghodhbane-Gtari F, Gtari M, Tisa LS
- journal: Genome Announc
- DOI: 10.1128/genomeA.00530-17
- year: 2017
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11315 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43829) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43829 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 75234 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50433.1 | StrainInfo: A central database for resolving microbial strain identifiers |