Strain identifier

BacDive ID: 5753

Type strain: Yes

Species: Francisella halioticida

Strain Designation: Shimane-1

Culture col. no.: DSM 23729, LMG 26062

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 17356

BacDive-ID: 5753

DSM-Number: 23729

keywords: animal pathogen, psychrophilic, Bacteria, 16S sequence, genome sequence

description: Francisella halioticida Shimane-1 is a psychrophilic animal pathogen that was isolated from haemolymph of a diseased cultured abalone .

strain history: <- O. Brevik, Univ. Bergen, Norway; Shimane-1 <- T. Kamaishi, National Research Institute of Aquaculture, Japan

doi: 10.13145/bacdive5753.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Thiotrichales
  • family: Francisellaceae
  • genus: Francisella
  • species: Francisella halioticida
  • full scientific name: Francisella halioticida Brevik et al. 2012

@ref: 17356

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Francisellaceae

genus: Francisella

species: Francisella halioticida

full scientific name: Francisella halioticida Brevik et al. 2012

strain designation: Shimane-1

type strain: yes

Morphology

colony morphology

  • @ref: 17356
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 17356
  • name: FRANCISELLA HALIOTICIDA MEDIUM (DSMZ Medium 429d)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium429d.pdf

culture temp

  • @ref: 17356
  • growth: positive
  • type: growth
  • temperature: 20
  • range: psychrophilic

Isolation, sampling and environmental information

isolation

  • @ref: 17356
  • sample type: haemolymph of a diseased cultured abalone (Haliotis gigantea)
  • host species: Haliotis gigantea
  • geographic location: Shimane Prefecture
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Host#Invertebrates (Other)#Mollusca
#Host Body Product#Fluids

Safety information

risk assessment

  • @ref: 17356
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Francisella halioticida strain Shimane-1 16S ribosomal RNA gene, partial sequenceJF2903761421ena549298
17356Francisella halioticida gene for 16S rRNA, partial sequenceAB4492471456ena549298

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Francisella halioticida DSM 23729GCA_002211785completencbi549298
66792Francisella halioticida strain DSM 23729549298.4completepatric549298

GC content

  • @ref: 17356
  • GC-content: 31.4
  • method: sequence analysis

External links

@ref: 17356

culture collection no.: DSM 23729, LMG 26062

straininfo link

@refpassport
20218http://www.straininfo.net/strains/869383
20218http://www.straininfo.net/strains/856701

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17356Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23729)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23729
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)