Strain identifier
BacDive ID: 5752
Type strain: 
Species: Francisella hispaniensis
Strain Designation: F62, FhSp1, FnSp1
Strain history: <- W. Splettstoesser; FhSp1 <- M. Forsman <- R. Escudero
NCBI tax ID(s): 1088883 (strain), 622488 (species)
version 8.1 (current version)
General
@ref: 16358
BacDive-ID: 5752
DSM-Number: 22475
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Francisella hispaniensis F62 is an aerobe, mesophilic bacterium that was isolated from blood of a patient suffering from severe septicaemia secondary to acute obstructive pyelonephritis.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1088883 | strain |
| 622488 | species |
strain history
- @ref: 16358
- history: <- W. Splettstoesser; FhSp1 <- M. Forsman <- R. Escudero
doi: 10.13145/bacdive5752.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Francisellaceae
- genus: Francisella
- species: Francisella hispaniensis
- full scientific name: Francisella hispaniensis Huber et al. 2010
@ref: 16358
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Francisellaceae
genus: Francisella
species: Francisella hispaniensis
full scientific name: Francisella hispaniensis Huber et al. 2010
strain designation: F62, FhSp1, FnSp1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.522 | |
| 69480 | 99.975 | negative |
colony morphology
- @ref: 16358
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 16358
- name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/429c
- composition: Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16358 | positive | growth | 37 | mesophilic |
| 61556 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 61556
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|
| 16358 | blood of a patient suffering from severe septicaemia secondary to acute obstructive pyelonephritis | Spain | ESP | Europe | |
| 61556 | Human blood,severe septicaemia | Spain | ESP | Europe | 2003 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | |
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_234.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_68;96_165;97_178;98_199;99_234&stattab=map
- Last taxonomy: Francisella
- 16S sequence: FN252413
- Sequence Identity:
- Total samples: 5211
- soil counts: 843
- aquatic counts: 3089
- animal counts: 1134
- plant counts: 145
Safety information
risk assessment
- @ref: 16358
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16358
- description: Francisella sp. FSC454 16S rRNA gene, strain FSC454
- accession: FN252413
- length: 1474
- database: ena
- NCBI tax ID: 1088883
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Francisella hispaniensis FSC454 CCUG 58020 | GCA_001885235 | complete | ncbi | 1088883 |
| 66792 | Francisella hispaniensis FSC454 CCUG 58020 | GCA_001608445 | contig | ncbi | 1088883 |
| 66792 | Francisella hispaniensis FSC454 | 1088883.4 | wgs | patric | 1088883 |
| 66792 | Francisella hispaniensis FSC454 | 1088883.5 | complete | patric | 1088883 |
| 66792 | Francisella hispaniensis FSC454 strain CCUG 58020 | 1088883.6 | plasmid | patric | 1088883 |
| 66792 | Francisella hispaniensis CCUG 58020 | 2773858043 | complete | img | 1088883 |
| 66792 | Francisella hispaniensis FSC454, CCUG 58020 | 2504756030 | draft | img | 1088883 |
| 66792 | Francisella hispaniensis CCUG 58020 | 2744054722 | draft | img | 1088883 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 97.582 | no |
| gram-positive | no | 95.682 | no |
| anaerobic | no | 98.169 | yes |
| aerobic | yes | 57.578 | yes |
| halophile | no | 78.527 | no |
| spore-forming | no | 97.188 | no |
| glucose-util | yes | 82.551 | no |
| thermophile | no | 98.658 | yes |
| motile | no | 92.366 | no |
| glucose-ferment | no | 69.595 | no |
External links
@ref: 16358
culture collection no.: DSM 22475, CCUG 58020, FSC 454
straininfo link
- @ref: 75231
- straininfo: 404952
literature
- topic: Phylogeny
- Pubmed-ID: 19783615
- title: Description of Francisella hispaniensis sp. nov., isolated from human blood, reclassification of Francisella novicida (Larson et al. 1955) Olsufiev et al. 1959 as Francisella tularensis subsp. novicida comb. nov. and emended description of the genus Francisella.
- authors: Huber B, Escudero R, Busse HJ, Seibold E, Scholz HC, Anda P, Kampfer P, Splettstoesser WD
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.015941-0
- year: 2009
- mesh: Blood/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Francisella/*classification/genetics/*isolation & purification/metabolism, Gram-Negative Bacterial Infections/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16358 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22475) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22475 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 61556 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 58020) | https://www.ccug.se/strain?id=58020 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 75231 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404952.1 | StrainInfo: A central database for resolving microbial strain identifiers |