Strain identifier

BacDive ID: 5746

Type strain: Yes

Species: Imtechella halotolerans

Strain Designation: K1

Strain history: P. Anil Kumar K1.

NCBI tax ID(s): 1165090 (species)

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General

@ref: 17802

BacDive-ID: 5746

DSM-Number: 24931

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Imtechella halotolerans K1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine water.

NCBI tax id

  • NCBI tax id: 1165090
  • Matching level: species

strain history

@refhistory
17802<- A.K. Pinnaka, MTCC; K1
67770P. Anil Kumar K1.

doi: 10.13145/bacdive5746.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Imtechella
  • species: Imtechella halotolerans
  • full scientific name: Imtechella halotolerans Surendra et al. 2012

@ref: 17802

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Imtechella

species: Imtechella halotolerans

full scientific name: Imtechella halotolerans Surendra et al. 2012

strain designation: K1

type strain: yes

Morphology

cell morphology

  • @ref: 30541
  • gram stain: negative
  • cell length: 1.5 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 17802
  • incubation period: 8-14 days

pigmentation

  • @ref: 30541
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30541positivegrowth20-45
30541positiveoptimum33.5mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30541positivegrowth06-09alkaliphile
30541positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30541
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30541
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30541NaClpositivegrowth0-12 %
30541NaClpositiveoptimum3 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3054130089acetate+carbon source
3054116449alanine+carbon source
3054140585alpha-cyclodextrin+carbon source
30541286442-oxopentanoate+carbon source
3054122653asparagine+carbon source
3054135391aspartate+carbon source
3054117126DL-carnitine+carbon source
3054123652dextrin+carbon source
3054129987glutamate+carbon source
3054128087glycogen+carbon source
3054125017leucine+carbon source
3054118257ornithine+carbon source
3054126271proline+carbon source
3054117272propionate+carbon source
3054117822serine+carbon source
3054130031succinate+carbon source
3054126986threonine+carbon source
3054117748thymidine+carbon source
3054116704uridine+carbon source
305414853esculin+hydrolysis

enzymes

@refvalueactivityec
30541cytochrome oxidase+1.9.3.1
30541urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17802estuarine waterKerala, KochiIndiaINDAsia
67770Estuarine water at KochiKeralaIndiaINDAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Brackish
#Environmental#Aquatic#Estuary

taxonmaps

  • @ref: 69479
  • File name: preview.99_2050.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_230;96_1131;97_1327;98_1603;99_2050&stattab=map
  • Last taxonomy: Imtechella halotolerans subclade
  • 16S sequence: FR774044
  • Sequence Identity:
  • Total samples: 1724
  • soil counts: 43
  • aquatic counts: 606
  • animal counts: 1069
  • plant counts: 6

Safety information

risk assessment

  • @ref: 17802
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17802
  • description: Imtechella halotolerans K1 partial 16S rRNA gene, type strain K1T
  • accession: FR774044
  • length: 1435
  • database: ena
  • NCBI tax ID: 946077

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Imtechella halotolerans K1946077.8wgspatric946077
66792Imtechella halotolerans K12534681666draftimg946077
67770Imtechella halotolerans K1GCA_000260835contigncbi946077
66792Imtechella halotolerans JCM 17677GCA_028743515completencbi1165090

GC content

@refGC-contentmethod
1780246.1thermal denaturation, midpoint method (Tm)
3054146.1
1780235.5sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.073no
flagellatedno94.95no
gram-positiveno97.458yes
anaerobicno99.446yes
aerobicyes80.839no
halophileno74.168no
spore-formingno96.434yes
glucose-fermentno88.94no
thermophileno99.279yes
glucose-utilyes83.182no

External links

@ref: 17802

culture collection no.: DSM 24931, JCM 17677, MTCC 11055

straininfo link

  • @ref: 75225
  • straininfo: 377732

literature

  • topic: Phylogeny
  • Pubmed-ID: 22199208
  • title: Imtechella halotolerans gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from estuarine water.
  • authors: Surendra V, Bhawana P, Suresh K, Srinivas TNR, Anil Kumar P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.038356-0
  • year: 2011
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, India, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17802Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24931)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24931
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30541Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2687228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75225Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID377732.1StrainInfo: A central database for resolving microbial strain identifiers