Strain identifier

BacDive ID: 5716

Type strain: Yes

Species: Coenonia anatina

Strain Designation: 1502-91

Strain history: CIP <- 1999, LMG <- K.H. Hinz, School Vet. Med., Hannover, Germany <- B. Köhler, State Vet. Lab., Potsdam, Germany: strain 1502-91

NCBI tax ID(s): 78329 (species)

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General

@ref: 18002

BacDive-ID: 5716

DSM-Number: 25327

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Coenonia anatina 1502-91 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from Pekin duck.

NCBI tax id

  • NCBI tax id: 78329
  • Matching level: species

strain history

@refhistory
18002<- LMG <- K.-H. Hinz, University of Veterinary Medicine Hannover, Foundation, Germany <- B. Köhler, State Vet. Lab., Potsdam, Germany; 1502-91
116373CIP <- 1999, LMG <- K.H. Hinz, School Vet. Med., Hannover, Germany <- B. Köhler, State Vet. Lab., Potsdam, Germany: strain 1502-91

doi: 10.13145/bacdive5716.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Coenonia
  • species: Coenonia anatina
  • full scientific name: Coenonia anatina Vandamme et al. 1999

@ref: 18002

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Coenonia

species: Coenonia anatina

full scientific name: Coenonia anatina Vandamme et al. 1999

strain designation: 1502-91

type strain: yes

Morphology

cell morphology

  • @ref: 116373
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

@reftype of hemolysishemolysis abilityincubation period
18002alpha/beta11-2 days
1163731

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18002BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
18002COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38607MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116373CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
18002positivegrowth37mesophilic
38607positivegrowth37mesophilic
116373positivegrowth25-37mesophilic
116373nogrowth5psychrophilic
116373nogrowth15psychrophilic
116373nogrowth41thermophilic
116373nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
18002microaerophile
116373obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
116373NaClpositivegrowth2-4 %
116373NaClnogrowth0 %
116373NaClnogrowth8 %
116373NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369malate-assimilation25115
68369adipate-assimilation17128
68369decanoate-assimilation27689
68369gluconate-assimilation24265
68369maltose-assimilation17306
68369N-acetylglucosamine-assimilation59640
68369D-mannitol-assimilation16899
68369D-mannose-assimilation16024
68369L-arabinose-assimilation30849
68369D-glucose-assimilation17634
68369gelatin+hydrolysis5291
68369esculin-hydrolysis4853
68369urea-hydrolysis16199
68369arginine-hydrolysis29016
68369tryptophan-energy source27897
68369nitrate-reduction17632
116373esculin-hydrolysis4853
116373hippurate+hydrolysis606565
116373nitrate-reduction17632
116373nitrite+reduction16301
116373malonate-assimilation15792
116373glucose+degradation17234

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
1163736909metronidazoleyesnoyes
1163730129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11637335581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole-
11637315688acetoin+
11637317234glucose-

enzymes

@refvalueactivityec
18002catalase+1.11.1.6
18002cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase+3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116373oxidase+
116373beta-galactosidase+3.2.1.23
116373alcohol dehydrogenase-1.1.1.1
116373gelatinase-
116373amylase+
116373DNase+
116373caseinase-3.4.21.50
116373catalase+1.11.1.6
116373tween esterase-
116373gamma-glutamyltransferase-2.3.2.2
116373lecithinase-
116373lipase-
116373lysine decarboxylase-4.1.1.18
116373ornithine decarboxylase-4.1.1.17
116373phenylalanine ammonia-lyase-4.3.1.24
116373protease-
116373tryptophan deaminase-
116373urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116373-+++-++-+-++-+-+-+-+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
18002--+/----++------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116373-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
18002Pekin duckGermanyDEUEurope
57079Pekin duckGermanyDEUEurope1991
116373Pekin duckGermanyDEUEurope1991

isolation source categories

  • Cat1: #Host
  • Cat2: #Birds

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
18002yes2Risk group (German classification)
1163731Risk group (French classification)

Sequence information

16S sequences

  • @ref: 18002
  • description: Coenonia anatina 16S rRNA gene
  • accession: Y17612
  • length: 1606
  • database: ena
  • NCBI tax ID: 78329

External links

@ref: 18002

culture collection no.: DSM 25327, CIP 106119, LMG 14382, CCUG 46148

straininfo link

  • @ref: 75198
  • straininfo: 11944

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10319512Coenonia anatina gen. nov., sp. nov., a novel bacterium associated with respiratory disease in ducks and geese.Vandamme P, Vancanneyt M, Segers P, Ryll M, Kohler B, Ludwig W, Hinz KHInt J Syst Bacteriol10.1099/00207713-49-2-8671999Animals, Bacterial Proteins/chemistry, Bacterial Typing Techniques, Bacteroidetes/*classification/metabolism, Base Composition, Capnocytophaga/classification, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Ducks, Fatty Acids/analysis, *Geese, Genes, rRNA, Gram-Negative Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Poultry Diseases/*microbiology, RNA, Ribosomal, 16S/genetics, Respiratory Tract Infections/*veterinaryGenetics
Phylogeny17158983Zhouia amylolytica gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from sediment of the South China Sea.Liu ZP, Wang BJ, Dai X, Liu XY, Liu SJInt J Syst Evol Microbiol10.1099/ijs.0.64587-02006Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitle
18002Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25327)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25327
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38607Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18215
57079Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46148)https://www.ccug.se/strain?id=46148
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
75198Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11944.1StrainInfo: A central database for resolving microbial strain identifiers
116373Curators of the CIPCollection of Institut Pasteur (CIP 106119)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106119