Strain identifier

BacDive ID: 5714

Type strain: Yes

Species: Bizionia argentinensis

Strain Designation: CCM-A-29 1259, JUB59

Strain history: <- W. P. Mac Cormack, Inst. Antártico Argentino, Buenos Aires, Argentina; JUB59

NCBI tax ID(s): 456455 (species)

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General

@ref: 8220

BacDive-ID: 5714

DSM-Number: 19628

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped

description: Bizionia argentinensis CCM-A-29 1259 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from surface marine water.

NCBI tax id

  • NCBI tax id: 456455
  • Matching level: species

strain history

  • @ref: 8220
  • history: <- W. P. Mac Cormack, Inst. Antártico Argentino, Buenos Aires, Argentina; JUB59

doi: 10.13145/bacdive5714.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Bizionia
  • species: Bizionia argentinensis
  • full scientific name: Bizionia argentinensis Bercovich et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Algorimicrobium argentinense

@ref: 8220

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Bizionia

species: Bizionia argentinensis

full scientific name: Bizionia argentinensis Bercovich et al. 2008

strain designation: CCM-A-29 1259, JUB59

type strain: yes

Morphology

cell morphology

  • @ref: 32510
  • gram stain: negative
  • cell length: 02-03 µm
  • cell width: 0.2-0.4 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32510
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8220
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8220positivegrowth20psychrophilic
32510positivegrowth02-28
32510positiveoptimum22-25

culture pH

@refabilitytypepH
32510positivegrowth7
32510positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32510
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32510
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32510NaClpositivegrowth01-06 %
32510NaClpositiveoptimum01-06 %

observation

  • @ref: 32510
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3251016449alanine+carbon source
3251027570histidine+carbon source
3251017272propionate+carbon source
3251026546rhamnose+carbon source

enzymes

@refvalueactivityec
32510catalase+1.11.1.6
32510cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 8220
  • sample type: surface marine water
  • geographic location: South Shetland Islands, King George Island (Isla 25 de Mayo), Potter Cove near the Argentinean Jubany Scientific Station (62° 14' S 58° 40' W)
  • continent: Australia and Oceania
  • latitude: -62.2333
  • longitude: -58.6667

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_5873.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_2813;97_3454;98_4367;99_5873&stattab=map
  • Last taxonomy: Bizionia argentinensis subclade
  • 16S sequence: EU021217
  • Sequence Identity:
  • Total samples: 570
  • soil counts: 21
  • aquatic counts: 511
  • animal counts: 37
  • plant counts: 1

Safety information

risk assessment

  • @ref: 8220
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8220
  • description: Bizionia argentinensis strain JUB59 16S ribosomal RNA gene, complete sequence
  • accession: EU021217
  • length: 1519
  • database: ena
  • NCBI tax ID: 1046627

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Bizionia argentinensis JUB59GCA_000224335contigncbi1046627
66792Bizionia argentinensis JUB591046627.3wgspatric1046627
66792Bizionia argentinensis JUB59, DSM 196282513237264draftimg1046627

GC content

@refGC-content
822034.0
3251034

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno87.583no
flagellatedno94.799yes
gram-positiveno98.262yes
anaerobicno99.349no
aerobicyes88.109no
halophileno50no
spore-formingno95yes
thermophileno99.785yes
glucose-utilyes80.773no
glucose-fermentno90.088no

External links

@ref: 8220

culture collection no.: DSM 19628

straininfo link

  • @ref: 75196
  • straininfo: 399870

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18842857Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica.Bercovich A, Vazquez SC, Yankilevich P, Coria SH, Foti M, Hernandez E, Vidal A, Ruberto L, Melo C, Marenssi S, Criscuolo M, Memoli M, Arguelles M, Mac Cormack WPInt J Syst Evol Microbiol10.1099/ijs.0.65599-02008Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/chemistry/*classification/*genetics/isolation & purification, Genes, Bacterial, Genes, rRNA, Molecular Sequence Data, Phospholipids/chemistry, Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride, Water MicrobiologyGenetics
Genetics22072650Draft genome sequence of Bizionia argentinensis, isolated from Antarctic surface water.Lanzarotti E, Pellizza L, Bercovich A, Foti M, Coria SH, Vazquez SC, Ruberto L, Hernandez EA, Dias RL, Mac Cormack WP, Cicero DO, Smal C, Nicolas MF, Vasconcelos AT, Marti MA, Turjanski AGJ Bacteriol10.1128/JB.06245-112011Antarctic Regions, Base Sequence, Flavobacteriaceae/classification/*genetics/*isolation & purification, *Genome, Bacterial, Molecular Sequence Data, Phylogeny, Seawater/*microbiologyPhylogeny
Phylogeny25103949Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YDAntonie Van Leeuwenhoek10.1007/s10482-014-0253-x2014Animals, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Intestines/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sea Cucumbers/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics
Genetics32736071Structure of the putative long tail fiber receptor-binding tip of a novel temperate bacteriophage from the Antarctic bacterium Bizionia argentinensis JUB59.Pellizza L, Lopez JL, Vazquez S, Sycz G, Guimaraes BG, Rinaldi J, Goldbaum FA, Aran M, Mac Cormack WP, Klinke SJ Struct Biol10.1016/j.jsb.2020.1075952020Antarctic Regions, Bacteriophages/*genetics, Flavobacteriaceae/*virology, Genome, Bacterial/genetics, Genome, Viral/genetics, Protein Binding/genetics
Metabolism36118216MliR, a novel MerR-like regulator of iron homeostasis, impacts metabolism, membrane remodeling, and cell adhesion in the marine Bacteroidetes Bizionia argentinensis.Pellizza L, Bialer MG, Sieira R, Aran MFront Microbiol10.3389/fmicb.2022.9877562022

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8220Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19628)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19628
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32510Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2873028776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75196Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399870.1StrainInfo: A central database for resolving microbial strain identifiers