Strain identifier
BacDive ID: 571
Type strain: 
Species: Viridibacillus arenosi
Strain Designation: R-17170
Strain history: <- J. Heyrman; R-17170 <- A. Felske
NCBI tax ID(s): 263476 (species)
version 8.1 (current version)
General
@ref: 6365
BacDive-ID: 571
DSM-Number: 16319
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-variable, motile, rod-shaped, colony-forming, pigmented
description: Viridibacillus arenosi R-17170 is an aerobe, spore-forming, mesophilic bacterium that forms irregular colonies and has a pink pigmentation.
NCBI tax id
- NCBI tax id: 263476
- Matching level: species
strain history
- @ref: 6365
- history: <- J. Heyrman; R-17170 <- A. Felske
doi: 10.13145/bacdive571.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Viridibacillus
- species: Viridibacillus arenosi
- full scientific name: Viridibacillus arenosi (Heyrman et al. 2005) Albert et al. 2007
synonyms
- @ref: 20215
- synonym: Bacillus arenosi
@ref: 6365
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Viridibacillus
species: Viridibacillus arenosi
full scientific name: Viridibacillus arenosi (Heyrman et al. 2005) Albert et al. 2007
strain designation: R-17170
type strain: yes
Morphology
cell morphology
- @ref: 23359
- gram stain: variable
- cell length: 3.0-8.0 µm
- cell width: 0.8-1.0 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
| @ref | colony size | colony color | colony shape | incubation period | medium used |
|---|---|---|---|---|---|
| 23359 | 1.0-2.0 mm | cream | irregular | 1 day | NA |
| 23358 | PCA, TSA and R2A |
pigmentation
- @ref: 23359
- production: yes
- color: pink
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 6365 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
| 23359 | NA, BFA | yes | ||
| 23358 | PCA, TSA and R2A | yes |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6365 | positive | growth | 30 | mesophilic |
| 23359 | positive | growth | 20-30 | |
| 23359 | no | growth | 45 | thermophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 23359 | no | growth | 5.0 | |
| 23359 | positive | growth | 7-9 | alkaliphile |
Physiology and metabolism
oxygen tolerance
- @ref: 23359
- oxygen tolerance: aerobe
spore formation
- @ref: 23359
- spore description: abundantly,spherical and appear in terminal positions, swelling the sporangia slightly
- type of spore: endospore
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 23359 | NaCl | positive | growth | 5 %(w/v) |
| 23359 | NaCl | no | growth | 7 %(w/v) |
metabolite utilization
| @ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
|---|---|---|---|---|
| 23359 | casein | - | hydrolysis | |
| 23359 | starch | - | hydrolysis | 28017 |
| 23359 | 4-nitrophenyl beta-D-galactopyranoside hydrolysate | - | other | |
| 23359 | citrate | - | other | 16947 |
| 23359 | hydrogen sulfide | - | other | 16136 |
| 23359 | nitrate | + | reduction | 17632 |
| 23359 | gelatin | +/- | hydrolysis | 5291 |
metabolite production
- @ref: 23359
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 23359
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 23359 | arginine dihydrolase | - | 3.5.3.6 |
| 23359 | catalase | + | 1.11.1.6 |
| 23359 | cytochrome oxidase | - | 1.9.3.1 |
| 23359 | lysine decarboxylase | - | 4.1.1.18 |
| 23359 | ornithine decarboxylase | - | 4.1.1.17 |
| 23359 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 6365
- sample type: soil
- geographic location: Drentse A research area
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_1713.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_974;97_1134;98_1352;99_1713&stattab=map
- Last taxonomy: Viridibacillus arvi
- 16S sequence: AJ627212
- Sequence Identity:
- Total samples: 4566
- soil counts: 2124
- aquatic counts: 689
- animal counts: 1411
- plant counts: 342
Safety information
risk assessment
- @ref: 6365
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23359
- description: Bacillus arenosi partial 16S rRNA gene, type strain LMG 22166
- accession: AJ627212
- length: 1506
- database: nuccore
- NCBI tax ID: 263476
GC content
- @ref: 23359
- GC-content: 35.0
- method: high performance liquid chromatography (HPLC)
External links
@ref: 6365
culture collection no.: DSM 16319, LMG 22166
straininfo link
- @ref: 70248
- straininfo: 128653
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15653863 | Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil. | Heyrman J, Rodriguez-Diaz M, Devos J, Felske A, Logan NA, De Vos P | Int J Syst Evol Microbiol | 10.1099/ijs.0.63240-0 | 2005 | Bacillus/chemistry/*classification/genetics/isolation & purification, DNA Fingerprinting/methods, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genome, Bacterial, Molecular Sequence Data, Netherlands, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology | Genetics |
| Phylogeny | 18048716 | Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. | Albert RA, Archambault J, Lempa M, Hurst B, Richardson C, Gruenloh S, Duran M, Worliczek HL, Huber BE, Rossello-Mora R, Schumann P, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.65256-0 | 2007 | Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Gram-Positive Endospore-Forming Bacteria/chemistry/*classification/*genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Genetics |
| Phylogeny | 34940943 | Viridibacillus soli sp. nov., isolated from forest soil in Ailaoshan National Nature Reserve. | Xu Y, Zhao JY, Geng Y, Yuan HR, Li LL, Wen ML, Li MG, Tang SK | Arch Microbiol | 10.1007/s00203-021-02676-x | 2021 | China, DNA, Bacterial/genetics, Fatty Acids, *Forests, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6365 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16319) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16319 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 23358 | Richard A. Albert, Julieta Archambault, Melissa Lempa, Beth Hurst, Christine Richardson, Stephanie Gruenloh, Metin Duran, Hanna Lucia Worliczek, Birgit E. Huber, Ramon Rosselló-Mora, Peter Schumann, Hans-Jürgen Busse | 10.1099/ijs.0.65256-0 | Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. | IJSEM 57: 2729-2737 2007 | 18048716 | |
| 23359 | Jeroen Heyrman, Marina Rodríguez-Díaz, Joke Devos, Andreas Felske, Niall A. Logan, Paul De Vos | 10.1099/ijs.0.63240-0 | Bacillus arenosi sp. nov., Bacillus arvi sp. nov. and Bacillus humi sp. nov., isolated from soil | IJSEM 55: 111-117 2005 | 15653863 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 70248 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID128653.1 | StrainInfo: A central database for resolving microbial strain identifiers |