Strain identifier

BacDive ID: 5708

Type strain: Yes

Species: Chryseobacterium treverense

Strain history: CIP <- 2012, DSMZ <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB L-1519

NCBI tax ID(s): 631455 (species)

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General

@ref: 16233

BacDive-ID: 5708

DSM-Number: 22251

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, human pathogen

description: Chryseobacterium treverense DSM 22251 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human Blood.

NCBI tax id

  • NCBI tax id: 631455
  • Matching level: species

strain history

@refhistory
16233<- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB L-1519
123580CIP <- 2012, DSMZ <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB L-1519

doi: 10.13145/bacdive5708.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium treverense
  • full scientific name: Chryseobacterium treverense Yassin et al. 2010

  • synonyms

    • @ref: 20215
    • synonym: Kaistella treverensis

@ref: 16233

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium treverense

full scientific name: Chryseobacterium treverense Yassin et al. 2010

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29627negative1.4-2.7 µm0.5-0.6 µmrod-shapedno
69480no92.254
69480negative99.965
123580negativerod-shapedno

pigmentation

  • @ref: 29627
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16233COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16233R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
37593MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
123580CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
16233positivegrowth28mesophilic
29627positivegrowth05-30
29627positiveoptimum20psychrophilic
37593positivegrowth37mesophilic
61408positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29627aerobe
61408aerobe

spore formation

@refspore formationconfidence
29627no
69481no100
69480no99.989

halophily

@refsaltgrowthtested relationconcentration
29627NaClpositivegrowth0-6 %
29627NaClpositiveoptimum6 %

observation

  • @ref: 29627
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2962717128adipate+carbon source
2962716947citrate+carbon source
2962724265gluconate+carbon source
2962737684mannose+carbon source
29627506227N-acetylglucosamine+carbon source
2962718401phenylacetate+carbon source

enzymes

@refvalueactivityec
29627acid phosphatase+3.1.3.2
29627alkaline phosphatase+3.1.3.1
29627catalase+1.11.1.6
29627cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16233human BloodTrierGermanyDEUEurope
61408Human bloodTrier CityGermanyDEUEurope1996-02-01
123580Human, BloodTrierGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_6762.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_1132;97_1328;98_4988;99_6762&stattab=map
  • Last taxonomy: Kaistella
  • 16S sequence: FN297836
  • Sequence Identity:
  • Total samples: 1593
  • soil counts: 196
  • aquatic counts: 491
  • animal counts: 807
  • plant counts: 99

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
16233yes, in single cases1Risk group (German classification)
1235801Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16233
  • description: Chryseobacterium treverens partial 16S rRNA gene, type strain IMMIB L-1519T
  • accession: FN297836
  • length: 1523
  • database: ena
  • NCBI tax ID: 631455

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kaistella treverensis DSM 22251GCA_900114045contigncbi631455
66792Chryseobacterium treverense strain DSM 22251631455.4wgspatric631455
66792Chryseobacterium treverense DSM 222512687453775draftimg631455

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.296yes
anaerobicno98.856no
halophileno82.377yes
spore-formingno96.052yes
glucose-utilyes87.51no
thermophileno99.157yes
flagellatedno97.063no
aerobicyes86yes
motileno91.6no
glucose-fermentno93.351no

External links

@ref: 16233

culture collection no.: DSM 22251, CCUG 57657, CIP 110413, IMMIB L-1519

straininfo link

  • @ref: 75190
  • straininfo: 370650

literature

  • topic: Phylogeny
  • Pubmed-ID: 19801393
  • title: Chryseobacterium treverense sp. nov., isolated from a human clinical source.
  • authors: Yassin AF, Hupfer H, Siering C, Busse HJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.017327-0
  • year: 2009
  • mesh: Chryseobacterium/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae Infections/*microbiology, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16233Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22251)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22251
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29627Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2601728776041
37593Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8270
61408Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57657)https://www.ccug.se/strain?id=57657
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75190Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370650.1StrainInfo: A central database for resolving microbial strain identifiers
123580Curators of the CIPCollection of Institut Pasteur (CIP 110413)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110413