Strain identifier

BacDive ID: 5675

Type strain: Yes

Species: Chryseobacterium antarcticum

Strain Designation: AT 1013

Culture col. no.: DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6707

BacDive-ID: 5675

DSM-Number: 17047

keywords: Bacteria, 16S sequence, genome sequence, aerobe, psychrophilic

description: Chryseobacterium antarcticum AT 1013 is an aerobe, psychrophilic bacterium that was isolated from soil.

strain history: <- J. Chun; AT 1013

doi: 10.13145/bacdive5675.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium antarcticum
  • full scientific name: Chryseobacterium antarcticum (Yi et al. 2005) Kämpfer et al. 2009
  • synonyms

    @refsynonym
    20215Kaistella antarctica
    20215Sejongia antarctica

@ref: 6707

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium antarcticum

full scientific name: Chryseobacterium antarcticum (Yi et al. 2005) Kämpfer et al. 2009 emend. Hahnke et al. 2016

strain designation: AT 1013

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6707R2A MEDIUM (DSMZ Medium 830), aerobeyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
34203MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6707positivegrowth10-15psychrophilic
34203positivegrowth22psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 6707
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

  • @ref: 6707
  • sample type: soil
  • geographic location: King Sejong Station
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 6707
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6707
  • description: Chryseobacterium antarcticum strain AT1013 16S ribosomal RNA gene, partial sequence
  • accession: AY553293
  • length: 1439
  • database: ena
  • NCBI tax ID: 266748

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium antarcticum NCTC13489GCA_900637895completencbi266748
66792Chryseobacterium antarcticum DSM 17047GCA_900109615contigncbi266748
66792Chryseobacterium antarcticum LMG 24720GCA_000729985contigncbi266748
66792Chryseobacterium antarcticum strain DSM 17047266748.16wgspatric266748
66792Chryseobacterium antarcticum strain LMG 24720266748.6wgspatric266748
66792Chryseobacterium antarcticum strain NCTC13489266748.11completepatric266748
66792Chryseobacterium antarcticum DSM 170472687453776permanentimg266748

GC content

  • @ref: 6707
  • GC-content: 36.1
  • method: sequence analysis

External links

@ref: 6707

culture collection no.: DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225

straininfo link

@refpassport
20218http://www.straininfo.net/strains/662007
20218http://www.straininfo.net/strains/377062
20218http://www.straininfo.net/strains/382813
20218http://www.straininfo.net/strains/382814

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6707Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17047)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17047
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34203Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6323
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)