Strain identifier

BacDive ID: 5670

Type strain: Yes

Species: Chryseobacterium balustinum

Strain Designation: La 724

Strain history: CIP <- 1988, NCTC, Flavobacterium balustinum <- V. Bonifas, Lausanne, Switzerland: strain La 724 <- 1959, C. Tysset

NCBI tax ID(s): 1349755 (strain), 246 (species)

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General

@ref: 6578

BacDive-ID: 5670

DSM-Number: 16775

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium balustinum La 724 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from Fish blood.

NCBI tax id

NCBI tax idMatching level
1349755strain
246species

strain history

@refhistory
6578<- CIP <- NCTC <- V. Bonifas, Lausanne, Switzerland; La 724 <- C. Tysset
67770NCTC 11212 <-- V. Bonifas LA 724 <-- C. Tysset.
116725CIP <- 1988, NCTC, Flavobacterium balustinum <- V. Bonifas, Lausanne, Switzerland: strain La 724 <- 1959, C. Tysset

doi: 10.13145/bacdive5670.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium balustinum
  • full scientific name: Chryseobacterium balustinum (Harrison 1929) Vandamme et al. 1994

  • synonyms

    • @ref: 20215
    • synonym: Flavobacterium balustinum

@ref: 6578

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium balustinum

full scientific name: Chryseobacterium balustinum (Harrison 1929) Vandamme et al. 1994

strain designation: La 724

type strain: yes

Morphology

cell morphology

  • @ref: 116725
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6578TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34913MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
116725CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
6578positivegrowth30mesophilic
34913positivegrowth30mesophilic
67770positivegrowth30mesophilic
116725positivegrowth30mesophilic
116725nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116725
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371cellobiose+builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116725esculin+hydrolysis4853
116725nitrate+reduction17632
116725nitrite+reduction16301
116725tributyrin-hydrolysis35020

antibiotic resistance

  • @ref: 116725
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116725
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
116725oxidase+
116725beta-galactosidase-3.2.1.23
116725alcohol dehydrogenase-1.1.1.1
116725gelatinase-
116725catalase+1.11.1.6
116725lysine decarboxylase-4.1.1.18
116725ornithine decarboxylase-4.1.1.17
116725tryptophan deaminase-
116725urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116725----------+++---------++/-+-++/-----------+/-----------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116725++--+--+--------+-+------------------------------------+-------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
45919Fish bloodRiver DordogneFranceFRAEurope
6578fish, bloodLausanneSwitzerlandCHEEurope
67770Heart blood of fish
116725Animal, Fish, bloodLausanneSwitzerlandCHEEurope

isolation source categories

Cat1Cat2Cat3
#Host#Fishes
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_299.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_225;98_254;99_299&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: LC050177
  • Sequence Identity:
  • Total samples: 1234
  • soil counts: 131
  • aquatic counts: 174
  • animal counts: 665
  • plant counts: 264

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
65781Risk group (German classification)
1167251Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Chryseobacterium balustinum gene for 16S rRNA, partial sequence, strain: NBRC 15053AB6807581442ena246
20218Chryseobacterium balustinum 16S ribosomal RNA gene, partial sequenceM587711467ena246
6578Chryseobacterium balustinum strain LMG 8329 16S ribosomal RNA gene, partial sequenceAY4684471310ena246
67770Chryseobacterium balustinum gene for 16S ribosomal RNA, partial cds, strain: JCM 1278LC0501771439ena246

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium balustinum strain DSM 16775246.6wgspatric246
66792Chryseobacterium balustinum strain NCTC11212246.10wgspatric246
66792Chryseobacterium balustinum NCTC 112122808606673draftimg246
66792Chryseobacterium balustinum DSM 167752681813564draftimg246
67770Chryseobacterium balustinum DSM 16775GCA_900168205contigncbi246
67770Chryseobacterium balustinum NCTC11212GCA_900446785contigncbi246

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.33no
gram-positiveno98.15no
anaerobicno99.293no
aerobicyes88.864no
halophileno93.868no
spore-formingno95.35no
glucose-utilyes89.679no
flagellatedno96.611no
thermophileno99.751yes
glucose-fermentno90.993no

External links

@ref: 6578

culture collection no.: DSM 16775, ATCC 33487, CIP 103103, LMG 8329, NBRC 15053, NCTC 11212, CCUG 13228, JCM 1278, BCRC 17332, BCRC 17361, CCM 4450, CCTM 724, IAM 14209, IFO 15053, JCM 21074, LMG 4010, NCIMB 2270

straininfo link

  • @ref: 75152
  • straininfo: 2813

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15545478Kaistella koreensis gen. nov., sp. nov., a novel member of the Chryseobacterium-Bergeyella-Riemerella branch.Kim MK, Im WT, Shin YK, Lim JH, Kim SH, Lee BC, Park MY, Lee KY, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.02998-02004Bacterial Typing Techniques, Base Composition, Chryseobacterium/genetics, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Flavobacteriaceae/*classification/cytology/*isolation & purification/physiology, Fresh Water/*microbiology, Genes, rRNA, Gentian Violet, Korea, Molecular Sequence Data, Phenazines, Phylogeny, Pigments, Biological, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Water MicrobiologyEnzymology
Phylogeny19819990Soonwooa buanensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from seawater.Joung Y, Song J, Lee K, Oh HM, Joh K, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.017707-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny36410095Genomic insight into Chryseobacterium turcicum sp. nov. and Chryseobacterium muglaense sp. nov. isolated from farmed rainbow trout in Turkey.Saticioglu IB, Ay H, Altun S, Duman MSyst Appl Microbiol10.1016/j.syapm.2022.1263852022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6578Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16775)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16775
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34913Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14862
45919Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13228)https://www.ccug.se/strain?id=13228
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75152Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2813.1StrainInfo: A central database for resolving microbial strain identifiers
116725Curators of the CIPCollection of Institut Pasteur (CIP 103103)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103103