Strain identifier
BacDive ID: 5654
Type strain:
Species: Tenacibaculum adriaticum
Strain Designation: B390
Strain history: H. Heindl B390.
NCBI tax ID(s): 413713 (species)
General
@ref: 7721
BacDive-ID: 5654
DSM-Number: 18961
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped
description: Tenacibaculum adriaticum B390 is a mesophilic, Gram-negative, motile bacterium that was isolated from bryozoan Schizobrachiella sanguinea.
NCBI tax id
- NCBI tax id: 413713
- Matching level: species
strain history
@ref | history |
---|---|
7721 | <- H. Heindl, IFM-GEOMAR, Kiel, Germany; B390 <- H. Heindl, Kieler Wirkstoff-Zentrum (KiWiZ), Leibniz-Inst. Marine Sci., Germany |
67770 | H. Heindl B390. |
doi: 10.13145/bacdive5654.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Tenacibaculum
- species: Tenacibaculum adriaticum
- full scientific name: Tenacibaculum adriaticum Heindl et al. 2008
@ref: 7721
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Tenacibaculum
species: Tenacibaculum adriaticum
full scientific name: Tenacibaculum adriaticum Heindl et al. 2008
strain designation: B390
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|---|
32365 | negative | 2.5 µm | 0.3 µm | rod-shaped | yes | gliding | |
69480 | negative | 99.995 |
pigmentation
- @ref: 32365
- production: yes
Culture and growth conditions
culture medium
- @ref: 7721
- name: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514a
- composition: Name: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a) Composition: Agar 15.0 g/l NaCl 9.725 g/l MgCl2 2.95 g/l Bacto peptone 2.5 g/l Na2SO4 1.62 g/l CaCl2 0.9 g/l Yeast extract 0.5 g/l KCl 0.275 g/l NaHCO3 0.08 g/l Fe(III) citrate 0.05 g/l KBr 0.04 g/l SrCl2 0.017 g/l H3BO3 0.011 g/l Na2HPO4 0.004 g/l Na-silicate 0.002 g/l NaF 0.0012 g/l (NH4)NO3 0.0008 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7721 | positive | growth | 28 | mesophilic |
32365 | positive | growth | 05-34 | |
32365 | positive | optimum | 22 | psychrophilic |
67770 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32365 | positive | growth | 05-09 | alkaliphile |
32365 | positive | optimum | 7 |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 99 |
69480 | no | 99.989 |
halophily
- @ref: 32365
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 1.5 %
observation
- @ref: 67770
- observation: quinones: MK-6
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32365 | 30089 | acetate | + | carbon source |
32365 | 40585 | alpha-cyclodextrin | + | carbon source |
32365 | 35391 | aspartate | + | carbon source |
32365 | 17057 | cellobiose | + | carbon source |
32365 | 23652 | dextrin | + | carbon source |
32365 | 29987 | glutamate | + | carbon source |
32365 | 28087 | glycogen | + | carbon source |
32365 | 24996 | lactate | + | carbon source |
32365 | 17306 | maltose | + | carbon source |
32365 | 18257 | ornithine | + | carbon source |
32365 | 26271 | proline | + | carbon source |
32365 | 30031 | succinate | + | carbon source |
32365 | 53423 | tween 40 | + | carbon source |
32365 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32365 | gelatinase | + | |
32365 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
7721 | bryozoan Schizobrachiella sanguinea | Schizobrachiella sanguinea | Adriatic Sea, near Rovinj | Croatia | HRV | Europe |
67770 | Bryozoan Schizobrachiella sanguinea from the Adriatic Sea | Schizobrachiella sanguinea | near Rovinj | Croatia | HRV | Europe |
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
Safety information
risk assessment
- @ref: 7721
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7721
- description: Tenacibaculum adriaticum partial 16S rRNA gene, type strain B390
- accession: AM412314
- length: 1441
- database: ena
- NCBI tax ID: 413713
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Tenacibaculum adriaticum strain DSM 18961 | 413713.3 | wgs | patric | 413713 |
66792 | Tenacibaculum adriaticum DSM 18961 | 2756170228 | draft | img | 413713 |
67770 | Tenacibaculum adriaticum DSM 18961 | GCA_008124875 | scaffold | ncbi | 413713 |
GC content
@ref | GC-content | method |
---|---|---|
7721 | 31.6 | |
67770 | 31.6 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
gram-positive | no | 98.203 | yes |
anaerobic | no | 99.489 | no |
halophile | no | 83.787 | yes |
spore-forming | no | 96.116 | no |
glucose-util | yes | 82.763 | no |
aerobic | yes | 90.269 | no |
flagellated | no | 96.218 | no |
thermophile | no | 98.265 | no |
motile | no | 88.575 | no |
glucose-ferment | no | 92.428 | no |
External links
@ref: 7721
culture collection no.: DSM 18961, JCM 14633
straininfo link
- @ref: 75137
- straininfo: 343473
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18319452 | Tenacibaculum adriaticum sp. nov., from a bryozoan in the Adriatic Sea. | Heindl H, Wiese J, Imhoff JF | Int J Syst Evol Microbiol | 10.1099/ijs.0.65383-0 | 2008 | Animals, Bacterial Typing Techniques, Base Composition, Bryozoa/*microbiology, Croatia, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, Sequence Analysis, DNA, Species Specificity | Genetics |
Phylogeny | 33629140 | Tenacibaculum pelagium sp. nov., isolated from marine sediment. | Shang DD, Lun HY, Zhu KL, Chen GJ, Du ZJ | Arch Microbiol | 10.1007/s00203-021-02208-7 | 2021 | Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phosphatidylethanolamines/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/*isolation & purification, Vitamin K 2/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
7721 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18961) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18961 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
32365 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28594 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
75137 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID343473.1 | StrainInfo: A central database for resolving microbial strain identifiers |