Strain identifier

BacDive ID: 5654

Type strain: Yes

Species: Tenacibaculum adriaticum

Strain Designation: B390

Strain history: H. Heindl B390.

NCBI tax ID(s): 413713 (species)

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General

@ref: 7721

BacDive-ID: 5654

DSM-Number: 18961

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, motile, rod-shaped

description: Tenacibaculum adriaticum B390 is a mesophilic, Gram-negative, motile bacterium that was isolated from bryozoan Schizobrachiella sanguinea.

NCBI tax id

  • NCBI tax id: 413713
  • Matching level: species

strain history

@refhistory
7721<- H. Heindl, IFM-GEOMAR, Kiel, Germany; B390 <- H. Heindl, Kieler Wirkstoff-Zentrum (KiWiZ), Leibniz-Inst. Marine Sci., Germany
67770H. Heindl B390.

doi: 10.13145/bacdive5654.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Tenacibaculum
  • species: Tenacibaculum adriaticum
  • full scientific name: Tenacibaculum adriaticum Heindl et al. 2008

@ref: 7721

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Tenacibaculum

species: Tenacibaculum adriaticum

full scientific name: Tenacibaculum adriaticum Heindl et al. 2008

strain designation: B390

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
32365negative2.5 µm0.3 µmrod-shapedyesgliding
125438no94.512
125438negative96.731
125439negative99.4

pigmentation

  • @ref: 32365
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7721
  • name: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514a
  • composition: Name: HALF STRENGTH BACTO MARINE BROTH (DSMZ Medium 514a) Composition: Agar 15.0 g/l NaCl 9.725 g/l MgCl2 2.95 g/l Bacto peptone 2.5 g/l Na2SO4 1.62 g/l CaCl2 0.9 g/l Yeast extract 0.5 g/l KCl 0.275 g/l NaHCO3 0.08 g/l Fe(III) citrate 0.05 g/l KBr 0.04 g/l SrCl2 0.017 g/l H3BO3 0.011 g/l Na2HPO4 0.004 g/l Na-silicate 0.002 g/l NaF 0.0012 g/l (NH4)NO3 0.0008 g/l Distilled water

culture temp

@refgrowthtypetemperature
7721positivegrowth28
32365positivegrowth05-34
32365positiveoptimum22
67770positivegrowth25

culture pH

@refabilitytypepHPH range
32365positivegrowth05-09alkaliphile
32365positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 97.4

spore formation

  • @ref: 125438
  • spore formation: no
  • confidence: 92

halophily

  • @ref: 32365
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 1.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3236530089acetate+carbon source
3236540585alpha-cyclodextrin+carbon source
3236535391aspartate+carbon source
3236517057cellobiose+carbon source
3236523652dextrin+carbon source
3236529987glutamate+carbon source
3236528087glycogen+carbon source
3236524996lactate+carbon source
3236517306maltose+carbon source
3236518257ornithine+carbon source
3236526271proline+carbon source
3236530031succinate+carbon source
3236553423tween 40+carbon source
323654853esculin+hydrolysis

enzymes

@refvalueactivityec
32365gelatinase+
32365cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
7721bryozoan Schizobrachiella sanguineaSchizobrachiella sanguineaAdriatic Sea, near RovinjCroatiaHRVEurope
67770Bryozoan Schizobrachiella sanguinea from the Adriatic SeaSchizobrachiella sanguineanear RovinjCroatiaHRVEurope

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)

Safety information

risk assessment

  • @ref: 7721
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7721
  • description: Tenacibaculum adriaticum partial 16S rRNA gene, type strain B390
  • accession: AM412314
  • length: 1441
  • database: nuccore
  • NCBI tax ID: 413713

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tenacibaculum adriaticum strain DSM 18961413713.3wgspatric413713
66792Tenacibaculum adriaticum DSM 189612756170228draftimg413713
67770Tenacibaculum adriaticum DSM 18961GCA_008124875scaffoldncbi413713

GC content

@refGC-contentmethod
772131.6
6777031.6high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.731yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no95.992no
125438spore-formingspore-formingAbility to form endo- or exosporesno92no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes85.883no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.954yes
125438motile2+flagellatedAbility to perform flagellated movementno94.512yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesno89.2
125439BacteriaNetmotilityAbility to perform movementno56.8
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.4
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.4

External links

@ref: 7721

culture collection no.: DSM 18961, JCM 14633

straininfo link

  • @ref: 75137
  • straininfo: 343473

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18319452Tenacibaculum adriaticum sp. nov., from a bryozoan in the Adriatic Sea.Heindl H, Wiese J, Imhoff JFInt J Syst Evol Microbiol10.1099/ijs.0.65383-02008Animals, Bacterial Typing Techniques, Base Composition, Bryozoa/*microbiology, Croatia, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny33629140Tenacibaculum pelagium sp. nov., isolated from marine sediment.Shang DD, Lun HY, Zhu KL, Chen GJ, Du ZJArch Microbiol10.1007/s00203-021-02208-72021Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phosphatidylethanolamines/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Tenacibaculum/*classification/genetics/*isolation & purification, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7721Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18961)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18961
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32365Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2859428776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75137Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID343473.1StrainInfo: A central database for resolving microbial strain identifiers
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1