Strain identifier

BacDive ID: 5644

Type strain: Yes

Species: Salegentibacter salarius

Strain Designation: ISL-6

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 435906 (species)

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General

@ref: 16843

BacDive-ID: 5644

DSM-Number: 23401

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Salegentibacter salarius ISL-6 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine solar saltern.

NCBI tax id

  • NCBI tax id: 435906
  • Matching level: species

strain history

@refhistory
16843<- CCUG <- J. H. Yoon, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive5644.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Salegentibacter
  • species: Salegentibacter salarius
  • full scientific name: Salegentibacter salarius Yoon et al. 2007

@ref: 16843

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Salegentibacter

species: Salegentibacter salarius

full scientific name: Salegentibacter salarius Yoon et al. 2007

strain designation: ISL-6

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
32282negative2.35 µm0.5 µmrod-shapedno
67771rod-shaped
67771negative
69480negative99.984

colony morphology

  • @ref: 60146
  • incubation period: 1-2 days

pigmentation

  • @ref: 32282
  • production: no

Culture and growth conditions

culture medium

  • @ref: 16843
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16843positivegrowth28mesophilic
32282positivegrowth04-41
32282positiveoptimum30mesophilic
60146positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
32282positivegrowth7.0-8.0
32282positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60146aerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
32282NaClpositivegrowth02-15 %
32282NaClpositiveoptimum8 %

observation

  • @ref: 67771
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3228228757fructose+carbon source
3228225115malate+carbon source
3228216634raffinose+carbon source
3228217992sucrose+carbon source
3228253424tween 20+carbon source
3228253423tween 40+carbon source
3228253425tween 60+carbon source
3228253426tween 80+carbon source
322824853esculin+hydrolysis

enzymes

@refvalueactivityec
32282acid phosphatase+3.1.3.2
32282alkaline phosphatase+3.1.3.1
32282catalase+1.11.1.6
32282cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
16843marine solar salternYellow SeaRepublic of KoreaKORAsia
60146Marine solar salternRepublic of KoreaKORAsia2005
67771From saltern fieldthe Yellow SeaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Condition#Saline
#Engineered#Industrial#Industrial production
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_7321.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_114;97_121;98_3802;99_7321&stattab=map
  • Last taxonomy: Salegentibacter salarius
  • 16S sequence: EF486353
  • Sequence Identity:
  • Total samples: 22
  • soil counts: 2
  • aquatic counts: 16
  • animal counts: 3
  • plant counts: 1

Safety information

risk assessment

  • @ref: 16843
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16843
  • description: Salegentibacter salarius strain ISL-6 16S ribosomal RNA gene, partial sequence
  • accession: EF486353
  • length: 1485
  • database: ena
  • NCBI tax ID: 435906

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salegentibacter salarius KCTC 12974GCA_001752425scaffoldncbi435906
66792Salegentibacter salarius DSM 23401GCA_900168265scaffoldncbi435906
66792Salegentibacter salarius KCTC 12974GCA_002833385contigncbi435906
66792Salegentibacter salarius strain DSM 23401435906.5wgspatric435906
66792Salegentibacter salarius strain KCTC 12974435906.4wgspatric435906
66792Salegentibacter salarius strain KCTC 12974435906.6wgspatric435906
66792Salegentibacter salarius DSM 234012595698207draftimg435906

GC content

  • @ref: 16843
  • GC-content: 37.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno93.742no
gram-positiveno98.129yes
anaerobicno98.429yes
aerobicyes87.659yes
halophileyes68.997no
spore-formingno93.458no
glucose-utilyes88.978no
thermophileno99.159yes
motileno87.748no
glucose-fermentno90.608no

External links

@ref: 16843

culture collection no.: DSM 23401, CCUG 54355, KCTC 12974

straininfo link

  • @ref: 75127
  • straininfo: 323270

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048717Salegentibacter salarius sp. nov., isolated from a marine solar saltern.Yoon JH, Jung SY, Kang SJ, Jung YT, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.65253-02007Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/chemistry/*classification/genetics/*isolation & purification, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics
Genetics27881540Genome Sequence of Salegentibacter salarius KCTC 12974, Isolated from a Marine Solar Saltern of the Yellow Sea in South Korea.Xu Y, Liu J, Zheng Q, Liu Y, Jiao NGenome Announc10.1128/genomeA.01308-162016Phylogeny

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16843Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23401)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23401
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32282Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2852228776041
60146Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54355)https://www.ccug.se/strain?id=54355
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75127Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID323270.1StrainInfo: A central database for resolving microbial strain identifiers