Strain identifier

BacDive ID: 563

Type strain: No

Species: Anoxybacillus kamchatkensis subsp. asaccharedens

Strain Designation: KG 8, KG8

Strain history: CIP <- 2006, K. Guven, Dicle Univ., Diyarbakir, Turkey: strain KG8

NCBI tax ID(s): 529374 (subspecies)

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General

@ref: 7552

BacDive-ID: 563

DSM-Number: 18475

keywords: 16S sequence, Bacteria, thermophilic, Gram-negative, rod-shaped

description: Anoxybacillus kamchatkensis subsp. asaccharedens KG 8 is a thermophilic, Gram-negative, rod-shaped bacterium that was isolated from mud, geothermal water.

NCBI tax id

  • NCBI tax id: 529374
  • Matching level: subspecies

strain history

@refhistory
7552<- K. Guven, Department of Biology, Dicle University; KG 8
367952006, K. Guven, Dicle Univ., Diyarbakir, Turkey: strain KG8
115953CIP <- 2006, K. Guven, Dicle Univ., Diyarbakir, Turkey: strain KG8

doi: 10.13145/bacdive563.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Anoxybacillus
  • species: Anoxybacillus kamchatkensis subsp. asaccharedens
  • full scientific name: Anoxybacillus kamchatkensis subsp. asaccharedens Gul-Guven et al. 2008

@ref: 7552

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Anoxybacillus

species: Anoxybacillus kamchatkensis subsp. asaccharedens

full scientific name: Anoxybacillus kamchatkensis subsp. asaccharedens Gul-Guven et al. 2008

strain designation: KG 8, KG8

type strain: no

Morphology

cell morphology

  • @ref: 115953
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 115953

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7552NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l MnSO4 0.01 g/l Distilled water
36795MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
115953CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7552positivegrowth50thermophilic
36795positivegrowth50thermophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
115953nitrate+reduction17632
115953nitrite+reduction16301

metabolite production

  • @ref: 115953
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
115953oxidase-
115953catalase+1.11.1.6
115953urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
115953--++-+--+---++-+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
115953+----+---+++-----+--+/-------+-+++-+/-+++--+------+--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
7552mud, geothermal waterTaslidere hot spring, BatmanTurkeyTURAsia
115953Environment, Mud, geothermal waterRatmanTurkeyTURAsia2005

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3885.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_465;97_1979;98_2434;99_3885&stattab=map
  • Last taxonomy: Anoxybacillus
  • 16S sequence: AM999779
  • Sequence Identity:
  • Total samples: 2028
  • soil counts: 183
  • aquatic counts: 335
  • animal counts: 1423
  • plant counts: 87

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
75521Risk group (German classification)
1159531Risk group (French classification)

Sequence information

16S sequences

  • @ref: 7552
  • description: Anoxybacillus kamchatkensis subsp. asaccharedens partial 16S rRNA gene, type strain KG8T
  • accession: AM999779
  • length: 1489
  • database: ena
  • NCBI tax ID: 529374

External links

@ref: 7552

culture collection no.: DSM 18475, CIP 109280

literature

  • topic: Phylogeny
  • Pubmed-ID: 19164875
  • title: Anoxybacillus kamchatkensis subsp. asaccharedens subsp. nov., a thermophilic bacterium isolated from a hot spring in Batman.
  • authors: Gul-Guven R, Guven K, Poli A, Nicolaus B
  • journal: J Gen Appl Microbiol
  • DOI: 10.2323/jgam.54.327
  • year: 2008
  • mesh: Bacillaceae/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Hot Springs/*microbiology, *Hot Temperature, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
7552Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18475)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18475
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36795Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7003
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
115953Curators of the CIPCollection of Institut Pasteur (CIP 109280)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109280