Strain identifier

BacDive ID: 5617

Type strain: Yes

Species: Mesonia mobilis

Strain history: <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 6059

NCBI tax ID(s): 1122226 (strain), 369791 (species)

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General

@ref: 8127

BacDive-ID: 5617

DSM-Number: 19841

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, chemoorganotroph, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Mesonia mobilis DSM 19841 is an obligate aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from seawater.

NCBI tax id

NCBI tax idMatching level
369791species
1122226strain

strain history

  • @ref: 8127
  • history: <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 6059

doi: 10.13145/bacdive5617.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Mesonia
  • species: Mesonia mobilis
  • full scientific name: Mesonia mobilis Nedashkovskaya et al. 2006

@ref: 8127

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Mesonia

species: Mesonia mobilis

full scientific name: Mesonia mobilis Nedashkovskaya et al. 2006

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
43393negative1-2.1 µm0.4-0.5 µmrod-shapedyesgliding
69480negative99.999

colony morphology

  • @ref: 43393
  • colony size: 1-3 mm
  • colony color: yellow
  • colony shape: circular
  • medium used: Marine Agar

pigmentation

  • @ref: 43393
  • production: no
  • name: Flexirubin-type

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8127BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
43393Marine agar (MA)yes

culture temp

@refgrowthtypetemperaturerange
8127positivegrowth28mesophilic
43393positiveoptimum28-30mesophilic
43393positivegrowth4-39

culture pH

@refabilitytypepHPH range
43393positivegrowth6-9.5alkaliphile
43393positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43393
  • oxygen tolerance: obligate aerobe

nutrition type

  • @ref: 43393
  • type: chemoorganotroph

spore formation

@refspore formationconfidence
69481no100
69480no99.994

halophily

@refsaltgrowthtested relationconcentration
43393NaClpositivegrowth1-12 %
43393NaClpositiveoptimum3-4 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4339362968cellulose-hydrolysis
4339315963ribitol-builds acid from
433932509agar-hydrolysis
4339385146carboxymethylcellulose-hydrolysis
43393casein-hydrolysis
4339317029chitin-hydrolysis
4339316947citrate-builds acid from
4339317057cellobiose-builds acid from
4339312936D-galactose-builds acid from
4339317634D-glucose+builds acid from
4339317716lactose-builds acid from
4339317306maltose+builds acid from
4339328053melibiose-builds acid from
4339325115malate-builds acid from
4339316991dna-hydrolysis
4339316813galactitol-builds acid from
4339329806fumarate-builds acid from
433935291gelatin+degradation
4339317754glycerol-builds acid from
4339317268myo-inositol-builds acid from
4339330849L-arabinose-builds acid from
4339318287L-fucose-builds acid from
4339362345L-rhamnose-builds acid from
4339317266L-sorbose-builds acid from
4339329864mannitol-builds acid from
43393506227N-acetylglucosamine-builds acid from
4339317632nitrate-reduction
4339316634raffinose-builds acid from
4339328017starch-hydrolysis
4339317992sucrose-builds acid from
4339353424tween 20+degradation
4339353423tween 40-hydrolysis
4339353426tween 80-hydrolysis
4339316199urea-hydrolysis
4339318222xylose-builds acid from

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitiveis resistant
4339328971ampicillinyesyes
433936472lincomycinyesyes
4339318208penicillin gyesyes
433933393carbenicillinyesyes
4339317833gentamicinyesyes
433936104kanamycinyesyes
433937507neomycinyesyes
4339316869oleandomycinyesyes
433938309polymyxin byesyes
4339317076streptomycinyesyes
4339327902tetracyclineyesyes

metabolite production

@refChebi-IDmetaboliteproduction
4339315688acetoinno
4339316136hydrogen sulfideno
4339335581indoleno

metabolite tests

  • @ref: 43393
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
43393beta-galactosidase-3.2.1.23
43393catalase-1.11.1.6
43393cytochrome oxidase-1.9.3.1
43393alkaline phosphatase-3.1.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 8127
  • sample type: seawater
  • geographic location: Sea of Japan, Gulf of Peter the Great, Troitsa Bay
  • country: Russia
  • origin.country: RUS
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_15175.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_7786;97_9357;98_11483;99_15175&stattab=map
  • Last taxonomy: Mesonia mobilis subclade
  • 16S sequence: DQ367409
  • Sequence Identity:
  • Total samples: 2890
  • soil counts: 19
  • aquatic counts: 2741
  • animal counts: 117
  • plant counts: 13

Safety information

risk assessment

  • @ref: 8127
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8127
  • description: Mesonia mobilis strain KMM 6059 16S ribosomal RNA gene, partial sequence
  • accession: DQ367409
  • length: 1434
  • database: ena
  • NCBI tax ID: 1122226

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mesonia mobilis KCTC 12708GCA_014651475scaffoldncbi369791
66792Mesonia mobilis DSM 19841GCA_000423405scaffoldncbi1122226
66792Mesonia mobilis DSM 198411122226.16wgspatric1122226
66792Mesonia mobilis strain KCTC 12708369791.4wgspatric369791
66792Mesonia mobilis DSM 198412523231063draftimg1122226

GC content

@refGC-contentmethod
812736.1
4339336.1Thermal denaturation, fluorometry

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.24no
flagellatedno93.915yes
gram-positiveno97.807no
anaerobicno99.391yes
aerobicyes92.719no
halophileyes64.192no
spore-formingno95.371no
thermophileno99.523yes
glucose-utilyes81.564no
glucose-fermentno86.377no

External links

@ref: 8127

culture collection no.: DSM 19841, KCTC 12708, KMM 6059, LMG 23670

straininfo link

  • @ref: 75100
  • straininfo: 132705

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17012575Mesonia mobilis sp. nov., isolated from seawater, and emended description of the genus Mesonia.Nedashkovskaya OI, Kim SB, Zhukova NV, Kwak J, Mikhailov VV, Bae KSInt J Syst Evol Microbiol10.1099/ijs.0.64376-02006Bacterial Typing Techniques, DNA, Bacterial/analysis, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phenotype, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNAGenetics
Phylogeny19654356Mesonia phycicola sp. nov., isolated from seaweed, and emended description of the genus Mesonia.Kang HS, Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.011338-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seaweed/*microbiologyMetabolism
Phylogeny25298378Mesonia aquimarina sp. nov., a marine bacterium isolated from coastal seawater.Choi A, Baek K, Lee H, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.069336-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny28807094Mesonia maritima sp. nov., isolated from seawater of the South Sea of Korea.Sung HR, Joh K, Shin KSInt J Syst Evol Microbiol10.1099/ijsem.0.0019742017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8127Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19841)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19841
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
43393Olga I. Nedashkovskaya, Seung Bum Kim, Natalia V. Zhukova, Jangryul Kwak, Valery V. Mikhailov, Kyung Sook Bae10.1099/ijs.0.64376-0Mesonia mobilis sp. nov., isolated from seawater, and emended description of the genus MesoniaIJSEM 56: 2433-2436 200617012575
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75100Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID132705.1StrainInfo: A central database for resolving microbial strain identifiers