Strain identifier

BacDive ID: 5614

Type strain: Yes

Species: Maribacter antarcticus

Strain Designation: CL-AP4

Strain history: B. C. Cho CL-AP4.

NCBI tax ID(s): 1122191 (strain), 505250 (species)

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General

@ref: 15697

BacDive-ID: 5614

DSM-Number: 21422

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, rod-shaped

description: Maribacter antarcticus CL-AP4 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from Antarctic green alga Pyramimonas gelidicola .

NCBI tax id

NCBI tax idMatching level
1122191strain
505250species

strain history

@refhistory
15697<- B. C. Cho, Seoul Natl. Univ., Republic of Korea; CL-AP4
67770B. C. Cho CL-AP4.

doi: 10.13145/bacdive5614.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter antarcticus
  • full scientific name: Maribacter antarcticus Zhang et al. 2009

@ref: 15697

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter antarcticus

full scientific name: Maribacter antarcticus Zhang et al. 2009

strain designation: CL-AP4

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29093negative2.25 µm0.4 µmrod-shapedno
69480negative99.995

pigmentation

  • @ref: 29093
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15697
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15697positivegrowth10psychrophilic
29093positivegrowth04-15psychrophilic
29093positiveoptimum10psychrophilic
67770positivegrowth10psychrophilic

culture pH

@refabilitytypepHPH range
29093positivegrowth7.0-9.0alkaliphile
29093positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 29093
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.992

halophily

@refsaltgrowthtested relationconcentration
29093NaClpositivegrowth02-06 %
29093NaClpositiveoptimum3.5 %

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2909353423tween 40+carbon source
2909353426tween 80+carbon source
290934853esculin+hydrolysis

enzymes

@refvalueactivityec
29093alkaline phosphatase+3.1.3.1
29093catalase+1.11.1.6
29093cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciescontinent
15697Antarctic green alga Pyramimonas gelidicola Pyramimonas gelidicolaAustralia and Oceania
67770Culture of the Antarctic green alga Pyramimonas gelidicolaPyramimonas gelidicola

isolation source categories

Cat1Cat2Cat3
#Host#Algae#Green algae
#Condition#Psychrophilic (<10°C)
#Climate#Cold#Polar

taxonmaps

  • @ref: 69479
  • File name: preview.99_2262.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_1222;97_1448;98_1766;99_2262&stattab=map
  • Last taxonomy: Maribacter antarcticus
  • 16S sequence: EU512921
  • Sequence Identity:
  • Total samples: 536
  • soil counts: 11
  • aquatic counts: 521
  • animal counts: 4

Safety information

risk assessment

  • @ref: 15697
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15697
  • description: Maribacter antarcticus strain CL-AP4 16S ribosomal RNA gene, partial sequence
  • accession: EU512921
  • length: 1410
  • database: ena
  • NCBI tax ID: 505250

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Maribacter antarcticus DSM 214221122191.4wgspatric1122191
66792Maribacter antarcticus DSM 214222556921603draftimg1122191
67770Maribacter antarcticus DSM 21422GCA_000621125scaffoldncbi1122191

GC content

@refGC-contentmethod
1569737.1high performance liquid chromatography (HPLC)
2909337.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.903yes
flagellatedno95.786no
gram-positiveno97.835yes
anaerobicno99.492yes
aerobicyes91.084no
halophileno71.08no
spore-formingno94.757no
thermophileno99.069yes
glucose-utilyes89.791no
glucose-fermentno88.154no

External links

@ref: 15697

culture collection no.: DSM 21422, JCM 15445, KCCM 90069

straininfo link

  • @ref: 75097
  • straininfo: 407915

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19502334Maribacter antarcticus sp. nov., a psychrophilic bacterium isolated from a culture of the Antarctic green alga Pyramimonas gelidicola.Zhang GI, Hwang CY, Kang SH, Cho BCInt J Syst Evol Microbiol10.1099/ijs.0.006056-02009Antarctic Regions, Bacterial Typing Techniques, Base Composition, Chlorophyta/growth & development/*microbiology, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Flavobacteriaceae/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityCultivation
Phylogeny23243094Maribacter chungangensis sp. nov., isolated from a green seaweed, and emended descriptions of the genus Maribacter and Maribacter arcticus.Weerawongwiwat V, Kang H, Jung MY, Kim WInt J Syst Evol Microbiol10.1099/ijs.0.039628-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seaweed/*microbiology, Sequence Analysis, DNA, Undaria/*microbiologyGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15697Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21422)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21422
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29093Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2552228776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75097Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407915.1StrainInfo: A central database for resolving microbial strain identifiers