Strain identifier

BacDive ID: 5606

Type strain: Yes

Species: Maribacter aquivivus

Strain history: CIP <- 2004, CCUG <- 2003, KMM

NCBI tax ID(s): 228958 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6466

BacDive-ID: 5606

DSM-Number: 16478

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Maribacter aquivivus KMM 3949 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water sample.

NCBI tax id

  • NCBI tax id: 228958
  • Matching level: species

strain history

@refhistory
6466<- S. B. Kim, KCTC; KMM 3949 <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok
116464CIP <- 2004, CCUG <- 2003, KMM

doi: 10.13145/bacdive5606.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Maribacter
  • species: Maribacter aquivivus
  • full scientific name: Maribacter aquivivus Nedashkovskaya et al. 2004

@ref: 6466

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Maribacter

species: Maribacter aquivivus

full scientific name: Maribacter aquivivus Nedashkovskaya et al. 2004

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30026negative2.5 µm0.45 µmrod-shapedno
116464negativerod-shapedyes

colony morphology

@refincubation period
579492 days
116464

pigmentation

@refproductionname
30026yes
116464noFlexirubin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6466BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33250Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116464CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6466positivegrowth28mesophilic
30026positivegrowth4.0-30
30026positiveoptimum22psychrophilic
33250positivegrowth30mesophilic
57949positivegrowth30mesophilic
116464positivegrowth5-30
116464nogrowth37mesophilic
116464nogrowth41thermophilic
116464nogrowth45thermophilic

culture pH

@refabilitytypepHPH range
30026positivegrowth5.5-10alkaliphile
30026positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30026aerobe
57949aerobe

spore formation

  • @ref: 30026
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30026NaClpositivegrowth1.0-7.0 %
30026NaClpositiveoptimum4 %
116464NaClpositivegrowth4-10 %
116464NaClnogrowth0 %
116464NaClnogrowth2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3002617234glucose+carbon source
3002617716lactose+carbon source
3002637684mannose+carbon source
3002617992sucrose+carbon source
3002653424tween 20+carbon source
3002653423tween 40+carbon source
3002653426tween 80+carbon source
3002617632nitrate+reduction
1164644853esculin+hydrolysis
116464606565hippurate+hydrolysis
11646417632nitrate-reduction
11646416301nitrite-reduction
11646415792malonate-assimilation

metabolite production

  • @ref: 116464
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11646415688acetoin-
11646417234glucose-

enzymes

@refvalueactivityec
30026alkaline phosphatase+3.1.3.1
30026catalase+1.11.1.6
30026cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116464oxidase+
116464beta-galactosidase+3.2.1.23
116464alcohol dehydrogenase-1.1.1.1
116464gelatinase+/-
116464amylase+
116464caseinase+3.4.21.50
116464catalase+1.11.1.6
116464tween esterase+
116464gamma-glutamyltransferase+2.3.2.2
116464lecithinase-
116464lipase-
116464lysine decarboxylase-4.1.1.18
116464ornithine decarboxylase-4.1.1.17
116464phenylalanine ammonia-lyase-4.3.1.24
116464protease+
116464tryptophan deaminase-
116464urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116464-+++-++-+-++++-+++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountrycontinentorigin.country
6466sea water sampleSea of Japan, Gulf of Peter the GreatInternational WatersAsia
57949SeawaterGulf of Peter the GreatAsia
116464Environment, Sea waterJapanAsiaJPN

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_6096.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_141;96_1222;97_1664;98_2415;99_6096&stattab=map
  • Last taxonomy: Maribacter aquivivus
  • 16S sequence: AY271625
  • Sequence Identity:
  • Total samples: 469
  • soil counts: 3
  • aquatic counts: 456
  • animal counts: 9
  • plant counts: 1

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
64661Risk group (German classification)
1164641Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6466
  • description: Bacteroidetes bacterium KMM 3949 16S ribosomal RNA gene, partial sequence
  • accession: AY271625
  • length: 1441
  • database: ena
  • NCBI tax ID: 228958

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Maribacter aquivivus DSM 16478GCA_900142175scaffoldncbi228958
66792Maribacter aquivivus strain DSM 16478228958.3wgspatric228958
66792Maribacter aquivivus DSM 164782622736581draftimg228958

GC content

@refGC-content
646635.0
3002635

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno86.783yes
flagellatedno95.363yes
gram-positiveno97.136no
anaerobicno99.678yes
aerobicyes94.187yes
halophileno70.32no
spore-formingno96.596no
thermophileno98.848yes
glucose-utilyes88.795yes
glucose-fermentno87.897no

External links

@ref: 6466

culture collection no.: KMM 3949, CIP 108495, DSM 16478, CCUG 48009, KCTC 12968

straininfo link

  • @ref: 75088
  • straininfo: 99604

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15280264Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov.Nedashkovskaya OI, Kim SB, Han SK, Lysenko AM, Rohde M, Rhee MS, Frolova GM, Falsen E, Mikhailov VV, Bae KSInt J Syst Evol Microbiol10.1099/ijs.0.02849-02004Aerobiosis, Catalase/metabolism, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Fatty Acids/analysis, Flavobacteriaceae/*classification/cytology/isolation & purification/physiology, Genes, rRNA, Genotype, Gentian Violet, Molecular Sequence Data, Oxidoreductases/metabolism, Phenazines, Phenotype, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ulva/*microbiologyGenetics
Phylogeny25090958Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea.Jung YT, Lee JS, Yoon JHAntonie Van Leeuwenhoek10.1007/s10482-014-0243-z2014Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification/physiology, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Korea, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature, Vitamin K 2/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6466Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16478)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16478
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30026Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2639028776041
33250Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6123
57949Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48009)https://www.ccug.se/strain?id=48009
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75088Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID99604.1StrainInfo: A central database for resolving microbial strain identifiers
116464Curators of the CIPCollection of Institut Pasteur (CIP 108495)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108495