Strain identifier

BacDive ID: 5594

Type strain: Yes

Species: Aquimarina muelleri

Strain history: <- Seung Bum Kim <- Olga I Nedashkovskaya, KMM, Russia

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8340

BacDive-ID: 5594

DSM-Number: 19832

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, rod-shaped

description: Aquimarina muelleri DSM 19832 is an aerobe, mesophilic, motile bacterium that was isolated from sea-water sample.

NCBI tax id

NCBI tax idMatching level
279356species
1121007strain

strain history

@refhistory
8340<- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 6020
67771<- Seung Bum Kim <- Olga I Nedashkovskaya, KMM, Russia

doi: 10.13145/bacdive5594.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina muelleri
  • full scientific name: Aquimarina muelleri Nedashkovskaya et al. 2005

@ref: 8340

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina muelleri

full scientific name: Aquimarina muelleri Nedashkovskaya et al. 2005 emend. Yu et al. 2013

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stainconfidence
67771rod-shapedyesgliding
67771negative
69480negative99.992

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_19832_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19832_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19832_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19832_4.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 8340
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8340positivegrowth28mesophilic
67771positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.988

observation

  • @ref: 67771
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcontinentcountryorigin.country
8340sea-water sampleSea of Japan, Gulf of Peter the Great, Amursky BayAsia
67771From seawaterAmursky Bay, Gulf of Peter the Great, Sea of JapanAsiaRussiaRUS

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_3818.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_492;97_2356;98_2909;99_3818&stattab=map
  • Last taxonomy: Aquimarina muelleri subclade
  • 16S sequence: AY608406
  • Sequence Identity:
  • Total samples: 153
  • soil counts: 4
  • aquatic counts: 109
  • animal counts: 40

Safety information

risk assessment

  • @ref: 8340
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8340
  • description: Aquimarina muelleri strain KMM 6020 16S ribosomal RNA gene, partial sequence
  • accession: AY608406
  • length: 1427
  • database: ena
  • NCBI tax ID: 279356

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquimarina muelleri KCTC 12285GCA_014651355scaffoldncbi279356
66792Aquimarina muelleri DSM 19832GCA_000430665scaffoldncbi1121007
66792Aquimarina muelleri DSM 198321121007.3wgspatric1121007
66792Aquimarina muelleri strain KCTC 12285279356.3wgspatric279356
66792Aquimarina muelleri DSM 198322524023059draftimg1121007

GC content

  • @ref: 67771
  • GC-content: 31.6-32.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno87.085no
flagellatedno91.193no
gram-positiveno97.954yes
anaerobicno99.158yes
aerobicyes86.281no
halophileno69.622no
spore-formingno92.207no
glucose-utilyes77.443no
thermophileno99.496yes
glucose-fermentno89.714no

External links

@ref: 8340

culture collection no.: DSM 19832, KCTC 12285, KMM 6020, LMG 22569

straininfo link

  • @ref: 75076
  • straininfo: 131845

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653878Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov.Nedashkovskaya OI, Kim SB, Lysenko AM, Frolova GM, Mikhailov VV, Lee KH, Bae KSInt J Syst Evol Microbiol10.1099/ijs.0.63349-02005Bacterial Typing Techniques, Cytophaga/classification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/chemistry/*classification/genetics/physiology, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNAGenetics
Phylogeny20799083Aquimarina litoralis sp. nov., isolated from a coastal seawater.Oh YS, Kahng HY, Lee YS, Yoon BJ, Lim SB, Jung JS, Oh DC, Lee DHJ Microbiol10.1007/s12275-010-0088-82010DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Flavobacteriaceae/classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyGenetics
Phylogeny22771683Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri.Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.041509-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water MicrobiologyGenetics
Phylogeny24626966Aquimarina pacifica sp. nov., isolated from seawater.Zhang Z, Yu T, Xu T, Zhang XHInt J Syst Evol Microbiol10.1099/ijs.0.062695-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny25253586Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei.Li X, Wang L, Huang H, Lai Q, Shao ZAntonie Van Leeuwenhoek10.1007/s10482-014-0292-32014Animals, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification, Gastrointestinal Tract/microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Penaeidae/*microbiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salts/metabolism, Sequence Analysis, DNA, TemperatureGenetics
Phylogeny27259860Aquimarina aggregata sp. nov., isolated from seawater.Wang Y, Ming H, Guo W, Chen H, Zhou CInt J Syst Evol Microbiol10.1099/ijsem.0.0012092016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29580323Aquimarina celericrescens sp. nov., isolated from seawater.Wang NN, Li CM, Li YX, Du ZJInt J Syst Evol Microbiol10.1099/ijsem.0.0027332018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny29915892Aquimarina sediminis sp. nov., isolated from coastal sediment.Wang NN, Zhou LY, Li YX, Du ZJAntonie Van Leeuwenhoek10.1007/s10482-018-1115-82018Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8340Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19832)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19832
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75076Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID131845.1StrainInfo: A central database for resolving microbial strain identifiers