Strain identifier
BacDive ID: 5594
Type strain:
Species: Aquimarina muelleri
Strain history: <- Seung Bum Kim <- Olga I Nedashkovskaya, KMM, Russia
NCBI tax ID(s): 1121007 (strain), 279356 (species)
General
@ref: 8340
BacDive-ID: 5594
DSM-Number: 19832
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, rod-shaped
description: Aquimarina muelleri DSM 19832 is an aerobe, mesophilic, motile bacterium that was isolated from sea-water sample.
NCBI tax id
NCBI tax id | Matching level |
---|---|
279356 | species |
1121007 | strain |
strain history
@ref | history |
---|---|
8340 | <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 6020 |
67771 | <- Seung Bum Kim <- Olga I Nedashkovskaya, KMM, Russia |
doi: 10.13145/bacdive5594.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Aquimarina
- species: Aquimarina muelleri
- full scientific name: Aquimarina muelleri Nedashkovskaya et al. 2005
@ref: 8340
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Aquimarina
species: Aquimarina muelleri
full scientific name: Aquimarina muelleri Nedashkovskaya et al. 2005 emend. Yu et al. 2013
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | flagellum arrangement | gram stain | confidence |
---|---|---|---|---|---|
67771 | rod-shaped | yes | gliding | ||
67771 | negative | ||||
69480 | negative | 99.992 |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
66793 | EM_DSM_19832_1.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_19832_2.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_19832_3.jpg | electron microscopic image | © HZI/Manfred Rohde |
66793 | EM_DSM_19832_4.jpg | electron microscopic image | © HZI/Manfred Rohde |
Culture and growth conditions
culture medium
- @ref: 8340
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8340 | positive | growth | 28 | mesophilic |
67771 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.988 |
observation
- @ref: 67771
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | continent | country | origin.country |
---|---|---|---|---|---|
8340 | sea-water sample | Sea of Japan, Gulf of Peter the Great, Amursky Bay | Asia | ||
67771 | From seawater | Amursky Bay, Gulf of Peter the Great, Sea of Japan | Asia | Russia | RUS |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_3818.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_52;96_492;97_2356;98_2909;99_3818&stattab=map
- Last taxonomy: Aquimarina muelleri subclade
- 16S sequence: AY608406
- Sequence Identity:
- Total samples: 153
- soil counts: 4
- aquatic counts: 109
- animal counts: 40
Safety information
risk assessment
- @ref: 8340
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8340
- description: Aquimarina muelleri strain KMM 6020 16S ribosomal RNA gene, partial sequence
- accession: AY608406
- length: 1427
- database: ena
- NCBI tax ID: 279356
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aquimarina muelleri KCTC 12285 | GCA_014651355 | scaffold | ncbi | 279356 |
66792 | Aquimarina muelleri DSM 19832 | GCA_000430665 | scaffold | ncbi | 1121007 |
66792 | Aquimarina muelleri DSM 19832 | 1121007.3 | wgs | patric | 1121007 |
66792 | Aquimarina muelleri strain KCTC 12285 | 279356.3 | wgs | patric | 279356 |
66792 | Aquimarina muelleri DSM 19832 | 2524023059 | draft | img | 1121007 |
GC content
- @ref: 67771
- GC-content: 31.6-32.5
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 87.085 | no |
flagellated | no | 91.193 | no |
gram-positive | no | 97.954 | yes |
anaerobic | no | 99.158 | yes |
aerobic | yes | 86.281 | no |
halophile | no | 69.622 | no |
spore-forming | no | 92.207 | no |
glucose-util | yes | 77.443 | no |
thermophile | no | 99.496 | yes |
glucose-ferment | no | 89.714 | no |
External links
@ref: 8340
culture collection no.: DSM 19832, KCTC 12285, KMM 6020, LMG 22569
straininfo link
- @ref: 75076
- straininfo: 131845
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15653878 | Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov. | Nedashkovskaya OI, Kim SB, Lysenko AM, Frolova GM, Mikhailov VV, Lee KH, Bae KS | Int J Syst Evol Microbiol | 10.1099/ijs.0.63349-0 | 2005 | Bacterial Typing Techniques, Cytophaga/classification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Flavobacteriaceae/chemistry/*classification/genetics/physiology, Genes, rRNA, Genotype, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA | Genetics |
Phylogeny | 20799083 | Aquimarina litoralis sp. nov., isolated from a coastal seawater. | Oh YS, Kahng HY, Lee YS, Yoon BJ, Lim SB, Jung JS, Oh DC, Lee DH | J Microbiol | 10.1007/s12275-010-0088-8 | 2010 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Flavobacteriaceae/classification/genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology | Genetics |
Phylogeny | 22771683 | Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri. | Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.041509-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Pacific Ocean, Phosphatidylethanolamines/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
Phylogeny | 24626966 | Aquimarina pacifica sp. nov., isolated from seawater. | Zhang Z, Yu T, Xu T, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.062695-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Pacific Ocean, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Phylogeny | 25253586 | Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei. | Li X, Wang L, Huang H, Lai Q, Shao Z | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0292-3 | 2014 | Animals, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/*isolation & purification, Gastrointestinal Tract/microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Penaeidae/*microbiology, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Salts/metabolism, Sequence Analysis, DNA, Temperature | Genetics |
Phylogeny | 27259860 | Aquimarina aggregata sp. nov., isolated from seawater. | Wang Y, Ming H, Guo W, Chen H, Zhou C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001209 | 2016 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 29580323 | Aquimarina celericrescens sp. nov., isolated from seawater. | Wang NN, Li CM, Li YX, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002733 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 29915892 | Aquimarina sediminis sp. nov., isolated from coastal sediment. | Wang NN, Zhou LY, Li YX, Du ZJ | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1115-8 | 2018 | Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacteriaceae/classification/genetics/*isolation & purification/metabolism, Geologic Sediments/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8340 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19832) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19832 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
75076 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID131845.1 | StrainInfo: A central database for resolving microbial strain identifiers |