Strain identifier

BacDive ID: 5591

Type strain: Yes

Species: Aquimarina latercula

Strain Designation: SIO-1

Culture col. no.: DSM 2041, ATCC 23177, IAM 14305, KCTC 22638

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 684

BacDive-ID: 5591

DSM-Number: 2041

keywords: 16S sequence, genome sequence, Bacteria

description: Aquimarina latercula SIO-1 is a bacterium that was isolated from sea-water aquarium outflow.

strain history: <- H. Reichenbach <- ATCC <- R.A. Lewin, SIO-1

doi: 10.13145/bacdive5591.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aquimarina
  • species: Aquimarina latercula
  • full scientific name: Aquimarina latercula (Lewin 1969) Nedashkovskaya et al. 2006
  • synonyms

    @refsynonym
    20215Cytophaga latercula
    20215Stanierella latercula

@ref: 684

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aquimarina

species: Aquimarina latercula

full scientific name: Aquimarina latercula (Lewin 1969) Nedashkovskaya et al. 2006

strain designation: SIO-1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
684CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium172.pdf
684BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
39103MEDIUM 168 - for Cytophaga latercula and Flammeovirga apricayesAgar (15.000 g);Yeast extract (0.500 g);Sodium acetate (0.200 g);Tryptone (2.000 g);Beef extract (0.500 g);Synthetic sea solution - M0216 (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
684positivegrowth20-30
39103positivegrowth25mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 684
  • sample type: sea-water aquarium outflow
  • geographic location: California, La Jolla
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Aquatic#Marine

Safety information

risk assessment

  • @ref: 684
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Stanierella latercula gene for 16S ribosomal RNA, partial sequence, strain: ATCC 23177D126651258ena987
20218Aquimarina latercula strain ATCC 23177 16S ribosomal RNA gene, partial sequenceM587691470ena987
20218Aquimarina latercula gene for 16S rRNA, partial sequence, strain: NBRC 15938AB6810021447ena987
20218Bacillus subtilis strain SIO1 16S ribosomal RNA gene, partial sequenceHM8021401495ena1423

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquimarina latercula DSM 2041GCA_000430645scaffoldncbi1121006
66792Aquimarina latercula DSM 20411121006.3wgspatric1121006
66792Aquimarina latercula DSM 20412523533620permanentimg1121006

GC content

  • @ref: 684
  • GC-content: 34.2

External links

@ref: 684

culture collection no.: DSM 2041, ATCC 23177, IAM 14305, KCTC 22638

straininfo link

@refpassport
20218http://www.straininfo.net/strains/8786
20218http://www.straininfo.net/strains/8785
20218http://www.straininfo.net/strains/150382

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
684Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2041)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2041
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39103Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16754
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)