Strain identifier

BacDive ID: 5573

Type strain: Yes

Species: Flavobacterium resistens

Strain Designation: BD-b365

Strain history: CIP <- 2009, DSMZ <- C.O. Jeon, GSNU, Jinju, Korea: strain BD-b365

NCBI tax ID(s): 443612 (species)

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General

@ref: 8083

BacDive-ID: 5573

DSM-Number: 19382

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Flavobacterium resistens BD-b365 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment of Hakjang stream.

NCBI tax id

  • NCBI tax id: 443612
  • Matching level: species

strain history

@refhistory
8083<- C. O. Jeon, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; BD-b365
67771<- CO Jeon, Gyungsang Univ.
122162CIP <- 2009, DSMZ <- C.O. Jeon, GSNU, Jinju, Korea: strain BD-b365

doi: 10.13145/bacdive5573.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium resistens
  • full scientific name: Flavobacterium resistens Ryu et al. 2008

@ref: 8083

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium resistens

full scientific name: Flavobacterium resistens Ryu et al. 2008 emend. Kim et al. 2012

strain designation: BD-b365

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
32577negative1.6-3.2 µm0.4-0.6 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative
69480negative99.998
122162negativerod-shapedno

pigmentation

  • @ref: 32577
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8083R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41933MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122162CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566
122162CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8083positivegrowth30mesophilic
32577positivegrowth15-40
32577positiveoptimum20-30
41933positivegrowth30mesophilic
62131positivegrowth30mesophilic
67771positivegrowth20-30

culture pH

@refabilitytypepHPH range
32577positivegrowth6-9.5alkaliphile
32577positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32577aerobe
67771aerobe
122162facultative anaerobe

spore formation

@refspore formationconfidence
32577no
69481no100
69480no99.972

halophily

@refsaltgrowthtested relationconcentration
32577NaClpositivegrowth0-2 %
32577NaClpositiveoptimum0-0.5 %

observation

@refobservation
32577aggregates in chains
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3257717306maltose+carbon source
325774853esculin+hydrolysis
12216217632nitrate+reduction
12216216301nitrite-reduction

metabolite production

  • @ref: 122162
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32577catalase+1.11.1.6
32577cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
122162oxidase-
122162catalase+1.11.1.6
122162urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122162-+++-++---++-+-+++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8083sediment of Hakjang streamBusanRepublic of KoreaKORAsia
62131SedimentBusan,Hakjang streamRepublic of KoreaKORAsia
67771From contaminated soil(BTEX) sediment of the Hakjang stream in BusanRepublic of KoreaKORAsia
122162Environment, Sediment of Hakjang streamBusanRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
80831Risk group (German classification)
1221621Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8083
  • description: Flavobacterium sp. BD-b365 16S ribosomal RNA gene, partial sequence
  • accession: EF575563
  • length: 1479
  • database: ena
  • NCBI tax ID: 443612

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium resistens DSM 19382GCA_900182645contigncbi443612
66792Flavobacterium resistens DSM 19382GCA_009674815contigncbi443612
66792Flavobacterium resistens strain DSM 19382443612.9wgspatric443612
66792Flavobacterium resistens strain DSM 19382443612.6wgspatric443612
66792Flavobacterium resistens DSM 193822724679687draftimg443612

GC content

@refGC-contentmethod
808333.0fluorimetric
3257735.4
6777135.44

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.417yes
anaerobicno99.754yes
halophileno96.417no
spore-formingno94.03yes
glucose-utilyes92.027no
aerobicyes90.846no
flagellatedno94.838no
motileno84.699no
thermophileno99.53no
glucose-fermentno88.42no

External links

@ref: 8083

culture collection no.: DSM 19382, CIP 109941, KCTC 22078, CCUG 59848

straininfo link

  • @ref: 75056
  • straininfo: 359511

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18842838Flavobacterium resistens sp. nov., isolated from stream sediment.Ryu SH, Park JH, Moon JC, Sung Y, Lee SS, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.65720-02008Bacterial Typing Techniques, Base Composition, Fatty Acids/chemistry, Flavobacterium/chemistry/*classification/*genetics/isolation & purification, Genes, Bacterial, Genes, rRNA, Genotype, Geologic Sediments/microbiology, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, *Water MicrobiologyGenetics
Phylogeny19651737Flavobacterium fluvii sp. nov., isolated from stream sediment.Lee SH, Kim JM, Lee JR, Park W, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.010850-02009Base Composition, Base Sequence, DNA, Bacterial/chemistry, Flavobacterium/chemistry/*classification/physiology, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rivers/*microbiology, Sequence Homology, Nucleic Acid, *Water MicrobiologyGenetics
Phylogeny25969476Flavobacterium procerum sp. nov., isolated from freshwater.Feng Q, Han L, Yuan X, Tan X, Gao Y, Lv JInt J Syst Evol Microbiol10.1099/ijs.0.0003262015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Fresh Water/*microbiology, Glycolipids/chemistry, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Rivers/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny28771125Flavobacterium fluminis sp. nov. to accommodate an aerobic, halotolerant and gliding flavobacterium isolated from freshwater.Ahn JH, Kim TW, Kim TS, Joung Y, Kim SBInt J Syst Evol Microbiol10.1099/ijsem.0.0021352017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Fresh Water/*microbiology, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34085113Flavobacterium agrisoli sp. nov., a novel bacterium isolated from soil.Li W, Ten LN, Kim MK, Lee SY, Jung HYArch Microbiol10.1007/s00203-021-02376-62021Fatty Acids/analysis, *Flavobacterium/classification/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Species Specificity

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8083Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19382)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19382
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32577Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2879228776041
41933Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7741
62131Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59848)https://www.ccug.se/strain?id=59848
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75056Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID359511.1StrainInfo: A central database for resolving microbial strain identifiers
122162Curators of the CIPCollection of Institut Pasteur (CIP 109941)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109941