Strain identifier

BacDive ID: 557

Type strain: Yes

Species: Anoxybacillus voinovskiensis

Strain Designation: TH 13

Strain history: I. Yumoto TH13.

NCBI tax ID(s): 230470 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6742

BacDive-ID: 557

DSM-Number: 17075

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, spore-forming, thermophilic, Gram-positive, rod-shaped

description: Anoxybacillus voinovskiensis TH 13 is a facultative aerobe, spore-forming, thermophilic bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 230470
  • Matching level: species

strain history

@refhistory
6742<- T. Itoh <- I. Yumoto
67770I. Yumoto TH13.

doi: 10.13145/bacdive557.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Anoxybacillus
  • species: Anoxybacillus voinovskiensis
  • full scientific name: Anoxybacillus voinovskiensis Yumoto et al. 2004

@ref: 6742

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Anoxybacillus

species: Anoxybacillus voinovskiensis

full scientific name: Anoxybacillus voinovskiensis Yumoto et al. 2004

strain designation: TH 13

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30055positive3.3 µm0.5 µmrod-shapedno
69480yes95.286
69480positive100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6742MODIFIED TH AGAR (DSMZ Medium 1061)yeshttps://mediadive.dsmz.de/medium/1061Name: MODIFIED TH AGAR (DSMZ Medium 1061) Composition: Tryptone 5.0 g/l NaCl 5.0 g/l Yeast extract 3.0 g/l MnSO4 x H2O 0.01 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Agar Distilled water
6742CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerangeconfidence
6742positivegrowth45thermophilic
30055positivegrowth54thermophilic
30055positiveoptimum30-64
67770positivegrowth50thermophilic
69480thermophilic99.459

culture pH

@refabilitytypepH
30055positivegrowth7.0-8.0
30055positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30055
  • oxygen tolerance: facultative aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

halophily

@refsaltgrowthtested relationconcentration
30055NaClpositivegrowth0.0-3.0 %
30055NaClpositiveoptimum1.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3005522599arabinose+carbon source
3005517057cellobiose+carbon source
3005528757fructose+carbon source
3005517234glucose+carbon source
3005517306maltose+carbon source
3005537684mannose+carbon source
3005530911sorbitol+carbon source
3005517992sucrose+carbon source
3005553423tween 40+carbon source
3005553425tween 60+carbon source
3005518222xylose+carbon source
3005517632nitrate+reduction

enzymes

@refvalueactivityec
30055catalase+1.11.1.6
30055cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6742hot springKamtchatkaRussiaRUSAsia
67770Water sample from the Voinovskie Hot Springs in KamchatkaRussiaRUS

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 6742
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6742
  • description: Anoxybacillus voinovskiensis gene for 16S ribosomal RNA, partial sequence
  • accession: AB110008
  • length: 1506
  • database: ena
  • NCBI tax ID: 230470

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anoxybacillus voinovskiensis JCM 12111GCA_014646615contigncbi230470
66792Anoxybacillus voinovskiensis DSM 17075GCA_014196205scaffoldncbi230470
66792Anoxybacillus voinovskiensis strain DSM 17075230470.4wgspatric230470
66792Anoxybacillus voinovskiensis strain JCM 12111230470.5wgspatric230470
66792Anoxybacillus voinovskiensis DSM 170752829825107draftimg230470

GC content

@refGC-contentmethod
674243.9
6777043.9high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedyes85.998no
gram-positiveyes81.579no
anaerobicno95.806yes
aerobicyes62.442yes
halophileno96.363yes
spore-formingyes96.196no
glucose-utilyes90.57yes
thermophileyes99.605yes
motileyes89.153yes
glucose-fermentno91.915no

External links

@ref: 6742

culture collection no.: DSM 17075, JCM 12111, NCIMB 13956

straininfo link

  • @ref: 70235
  • straininfo: 132773

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15280298Anoxybacillus voinovskiensis sp. nov., a moderately thermophilic bacterium from a hot spring in Kamchatka.Yumoto I, Hirota K, Kawahara T, Nodasaka Y, Okuyama H, Matsuyama H, Yokota Y, Nakajima K, Hoshino TInt J Syst Evol Microbiol10.1099/ijs.0.02889-02004Aerobiosis, Anaerobiosis, Bacillaceae/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Genes, rRNA, Gentian Violet, Growth Inhibitors/pharmacology, Hot Springs/*microbiology, Hydrogen Sulfide/metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nitrates/metabolism, Nucleic Acid Hybridization, Oxidation-Reduction, Oxidoreductases/metabolism, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sequence Homology, Sodium Chloride/pharmacology, Temperature, Water MicrobiologyMetabolism
Phylogeny24052627Anoxybacillus calidus sp. nov., a thermophilic bacterium isolated from soil near a thermal power plant.Cihan AC, Cokmus C, Koc M, Ozcan BInt J Syst Evol Microbiol10.1099/ijs.0.056549-02013Anoxybacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, *Power Plants, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6742Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17075)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17075
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30055Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2641628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70235Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID132773.1StrainInfo: A central database for resolving microbial strain identifiers