Strain identifier
BacDive ID: 557
Type strain:
Species: Anoxybacillus voinovskiensis
Strain Designation: TH 13
Strain history: I. Yumoto TH13.
NCBI tax ID(s): 230470 (species)
General
@ref: 6742
BacDive-ID: 557
DSM-Number: 17075
keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, spore-forming, thermophilic, Gram-positive, rod-shaped
description: Anoxybacillus voinovskiensis TH 13 is a facultative aerobe, spore-forming, thermophilic bacterium that was isolated from hot spring.
NCBI tax id
- NCBI tax id: 230470
- Matching level: species
strain history
@ref | history |
---|---|
6742 | <- T. Itoh <- I. Yumoto |
67770 | I. Yumoto TH13. |
doi: 10.13145/bacdive557.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Anoxybacillus
- species: Anoxybacillus voinovskiensis
- full scientific name: Anoxybacillus voinovskiensis Yumoto et al. 2004
@ref: 6742
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Anoxybacillus
species: Anoxybacillus voinovskiensis
full scientific name: Anoxybacillus voinovskiensis Yumoto et al. 2004
strain designation: TH 13
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | confidence |
---|---|---|---|---|---|---|
30055 | positive | 3.3 µm | 0.5 µm | rod-shaped | no | |
69480 | yes | 95.286 | ||||
69480 | positive | 100 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6742 | MODIFIED TH AGAR (DSMZ Medium 1061) | yes | https://mediadive.dsmz.de/medium/1061 | Name: MODIFIED TH AGAR (DSMZ Medium 1061) Composition: Tryptone 5.0 g/l NaCl 5.0 g/l Yeast extract 3.0 g/l MnSO4 x H2O 0.01 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Agar Distilled water |
6742 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range | confidence |
---|---|---|---|---|---|
6742 | positive | growth | 45 | thermophilic | |
30055 | positive | growth | 54 | thermophilic | |
30055 | positive | optimum | 30-64 | ||
67770 | positive | growth | 50 | thermophilic | |
69480 | thermophilic | 99.459 |
culture pH
@ref | ability | type | pH |
---|---|---|---|
30055 | positive | growth | 7.0-8.0 |
30055 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30055
- oxygen tolerance: facultative aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30055 | NaCl | positive | growth | 0.0-3.0 % |
30055 | NaCl | positive | optimum | 1.5 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30055 | 22599 | arabinose | + | carbon source |
30055 | 17057 | cellobiose | + | carbon source |
30055 | 28757 | fructose | + | carbon source |
30055 | 17234 | glucose | + | carbon source |
30055 | 17306 | maltose | + | carbon source |
30055 | 37684 | mannose | + | carbon source |
30055 | 30911 | sorbitol | + | carbon source |
30055 | 17992 | sucrose | + | carbon source |
30055 | 53423 | tween 40 | + | carbon source |
30055 | 53425 | tween 60 | + | carbon source |
30055 | 18222 | xylose | + | carbon source |
30055 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30055 | catalase | + | 1.11.1.6 |
30055 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent |
---|---|---|---|---|---|
6742 | hot spring | Kamtchatka | Russia | RUS | Asia |
67770 | Water sample from the Voinovskie Hot Springs in Kamchatka | Russia | RUS |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 6742
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6742
- description: Anoxybacillus voinovskiensis gene for 16S ribosomal RNA, partial sequence
- accession: AB110008
- length: 1506
- database: ena
- NCBI tax ID: 230470
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Anoxybacillus voinovskiensis JCM 12111 | GCA_014646615 | contig | ncbi | 230470 |
66792 | Anoxybacillus voinovskiensis DSM 17075 | GCA_014196205 | scaffold | ncbi | 230470 |
66792 | Anoxybacillus voinovskiensis strain DSM 17075 | 230470.4 | wgs | patric | 230470 |
66792 | Anoxybacillus voinovskiensis strain JCM 12111 | 230470.5 | wgs | patric | 230470 |
66792 | Anoxybacillus voinovskiensis DSM 17075 | 2829825107 | draft | img | 230470 |
GC content
@ref | GC-content | method |
---|---|---|
6742 | 43.9 | |
67770 | 43.9 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
flagellated | yes | 85.998 | no |
gram-positive | yes | 81.579 | no |
anaerobic | no | 95.806 | yes |
aerobic | yes | 62.442 | yes |
halophile | no | 96.363 | yes |
spore-forming | yes | 96.196 | no |
glucose-util | yes | 90.57 | yes |
thermophile | yes | 99.605 | yes |
motile | yes | 89.153 | yes |
glucose-ferment | no | 91.915 | no |
External links
@ref: 6742
culture collection no.: DSM 17075, JCM 12111, NCIMB 13956
straininfo link
- @ref: 70235
- straininfo: 132773
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 15280298 | Anoxybacillus voinovskiensis sp. nov., a moderately thermophilic bacterium from a hot spring in Kamchatka. | Yumoto I, Hirota K, Kawahara T, Nodasaka Y, Okuyama H, Matsuyama H, Yokota Y, Nakajima K, Hoshino T | Int J Syst Evol Microbiol | 10.1099/ijs.0.02889-0 | 2004 | Aerobiosis, Anaerobiosis, Bacillaceae/*classification/cytology/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, DNA, Bacterial/chemistry, DNA, Ribosomal/chemistry, Genes, rRNA, Gentian Violet, Growth Inhibitors/pharmacology, Hot Springs/*microbiology, Hydrogen Sulfide/metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Nitrates/metabolism, Nucleic Acid Hybridization, Oxidation-Reduction, Oxidoreductases/metabolism, Phenazines, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sequence Homology, Sodium Chloride/pharmacology, Temperature, Water Microbiology | Metabolism |
Phylogeny | 24052627 | Anoxybacillus calidus sp. nov., a thermophilic bacterium isolated from soil near a thermal power plant. | Cihan AC, Cokmus C, Koc M, Ozcan B | Int J Syst Evol Microbiol | 10.1099/ijs.0.056549-0 | 2013 | Anoxybacillus/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, *Power Plants, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
6742 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17075) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17075 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30055 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26416 | 28776041 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
70235 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID132773.1 | StrainInfo: A central database for resolving microbial strain identifiers |