Strain identifier
BacDive ID: 553
Type strain: 
Species: Anoxybacillus kamchatkensis
Strain Designation: JW/VK-KG4
Strain history: <- J. Wiegel; JW/VK-KG4 <- V. V. Kevbrin
NCBI tax ID(s): 196180 (species)
version 8.1 (current version)
General
@ref: 5656
BacDive-ID: 553
DSM-Number: 14988
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, thermophilic, motile
description: Anoxybacillus kamchatkensis JW/VK-KG4 is a spore-forming, thermophilic, motile bacterium that was isolated from combined water-sediment.
NCBI tax id
- NCBI tax id: 196180
- Matching level: species
strain history
- @ref: 5656
- history: <- J. Wiegel; JW/VK-KG4 <- V. V. Kevbrin
doi: 10.13145/bacdive553.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Anoxybacillus
- species: Anoxybacillus kamchatkensis
- full scientific name: Anoxybacillus kamchatkensis Kevbrin et al. 2006
@ref: 5656
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Anoxybacillus
species: Anoxybacillus kamchatkensis
full scientific name: Anoxybacillus kamchatkensis Kevbrin et al. 2006
strain designation: JW/VK-KG4
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 95.962 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 5656
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 5656 | positive | growth | 55 | thermophilic | |
| 69480 | thermophilic | 99.999 |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 5656
- sample type: combined water-sediment
- geographic location: Kamchatka penn.
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_3885.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_79;96_465;97_1979;98_2434;99_3885&stattab=map
- Last taxonomy: Anoxybacillus
- 16S sequence: AF510985
- Sequence Identity:
- Total samples: 2028
- soil counts: 183
- aquatic counts: 335
- animal counts: 1423
- plant counts: 87
Safety information
risk assessment
- @ref: 5656
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5656
- description: Anoxybacillus kamchatkensis 16S ribosomal RNA gene, partial sequence
- accession: AF510985
- length: 1548
- database: ena
- NCBI tax ID: 196180
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anoxybacillus ayderensis DSM 14988 | GCA_013761015 | scaffold | ncbi | 265546 |
| 66792 | Anoxybacillus kamchatkensis strain DSM 14988 | 196180.5 | wgs | patric | 196180 |
| 66792 | Anoxybacillus kamchatkensis DSM 14988 | 2861196614 | draft | img | 196180 |
GC content
- @ref: 5656
- GC-content: 42
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 87.716 | no |
| flagellated | yes | 72.099 | no |
| gram-positive | yes | 84.606 | no |
| anaerobic | no | 93.738 | no |
| aerobic | no | 50 | no |
| halophile | no | 84.822 | no |
| spore-forming | yes | 93.811 | no |
| thermophile | yes | 99.391 | no |
| glucose-util | yes | 90.399 | no |
| glucose-ferment | no | 88.982 | no |
External links
@ref: 5656
culture collection no.: DSM 14988, ATCC BAA 549
straininfo link
- @ref: 70231
- straininfo: 291123
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16142505 | Anoxybacillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic bacterium with a broad pH optimum from the Geyser valley, Kamchatka. | Kevbrin VV, Zengler K, Lysenko AM, Wiegel J | Extremophiles | 10.1007/s00792-005-0479-7 | 2005 | Aerobiosis, Bacillaceae/*classification/cytology/genetics/*isolation & purification, Bacteria, Aerobic/classification/cytology/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Hydrogen-Ion Concentration, Phylogeny, Russia | Enzymology |
| Genetics | 34258259 | Whole-Genome Sequence Data Analysis of Anoxybacillus kamchatkensis NASTPD13 Isolated from Hot Spring of Myagdi, Nepal. | Yadav P, Sharma S, Bhattarai T, Sreerama L, Prasad GS, Sahni G, Maharjan J | Biomed Res Int | 10.1155/2021/1869748 | 2021 | Amino Acid Sequence, Anoxybacillus/enzymology/*genetics/ultrastructure, Bacterial Proteins/genetics/metabolism, DNA, Circular/genetics, *Data Analysis, Genome, Bacterial, Glycoside Hydrolases/metabolism, Hot Springs/*microbiology, Molecular Sequence Annotation, Nepal, Open Reading Frames/genetics, Phylogeny, *Whole Genome Sequencing, Xylose/metabolism | Phylogeny |
| Phylogeny | 36087143 | Genome-based reclassification of Anoxybacillus kamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillus ayderensis Dulger et al. 2004. | Inan Bektas K, Nalcaoglu A, Guler HI, Canakci S, Belduz AO | Arch Microbiol | 10.1007/s00203-022-03201-4 | 2022 | Anoxybacillus, DNA, Bacterial/chemistry/genetics, Phylogeny, *RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5656 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14988) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14988 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 70231 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID291123.1 | StrainInfo: A central database for resolving microbial strain identifiers |